BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780762|ref|YP_003065175.1| recombination protein RecR
[Candidatus Liberibacter asiaticus str. psy62]
         (201 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780762|ref|YP_003065175.1| recombination protein RecR [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 201

 Score =  407 bits (1047), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MQKKITGKEIENLIKILARIPGFGPRSARRATLHLVKKKEQLLGPLAEAMANIYNKVCLC 60
           MQKKITGKEIENLIKILARIPGFGPRSARRATLHLVKKKEQLLGPLAEAMANIYNKVCLC
Sbjct: 1   MQKKITGKEIENLIKILARIPGFGPRSARRATLHLVKKKEQLLGPLAEAMANIYNKVCLC 60

Query: 61  SICGNVDTTDPCAICIDQQRDASVIIVVEDVADLWALERSKAVNALYHVLGGSLSPLDRI 120
           SICGNVDTTDPCAICIDQQRDASVIIVVEDVADLWALERSKAVNALYHVLGGSLSPLDRI
Sbjct: 61  SICGNVDTTDPCAICIDQQRDASVIIVVEDVADLWALERSKAVNALYHVLGGSLSPLDRI 120

Query: 121 GPEDIGIQSLIERIEVKKIRELIFAISATIEGQTTAHYIMDKLKGIDVKITRLAYGIPMG 180
           GPEDIGIQSLIERIEVKKIRELIFAISATIEGQTTAHYIMDKLKGIDVKITRLAYGIPMG
Sbjct: 121 GPEDIGIQSLIERIEVKKIRELIFAISATIEGQTTAHYIMDKLKGIDVKITRLAYGIPMG 180

Query: 181 SELDYLDDGTIFEAIRSRTVL 201
           SELDYLDDGTIFEAIRSRTVL
Sbjct: 181 SELDYLDDGTIFEAIRSRTVL 201


>gi|254780680|ref|YP_003065093.1| seryl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 430

 Score = 25.0 bits (53), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 49  AMANIYNKVCLCSICGNVDT 68
           A  N+Y ++  CS CGN  +
Sbjct: 342 AGQNLYREISSCSTCGNFQS 361


>gi|254780696|ref|YP_003065109.1| glutathione synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 316

 Score = 24.6 bits (52), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 124 DIGIQ-SLIERIEVKKIRELIFAISATIEGQTTAHYIMDKLKGIDVKI 170
           +I IQ + I  ++VK+      A+ A + G    HY  D+L   D KI
Sbjct: 6   NIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKI 53


>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 22.7 bits (47), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 157 HYIMDKLKGIDVKITRLAYGIPMGSELDYLDDGTIFEAIRSRTVL 201
           HYI    + ++  +    Y +P G  +D L    I EA+    VL
Sbjct: 142 HYIFHNSQDVNFPLIEAVYSLPTGLSVD-LFKKIIVEALSRLPVL 185


>gi|254780975|ref|YP_003065388.1| D-ribulose-5 phosphate 3-epimerase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 224

 Score = 21.9 bits (45), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 12  NLIKILARIPGFGPRSARRATLHLVKKKEQLLG 44
           ++I I+   PGFG +    +T+  +++ + L+G
Sbjct: 134 DMILIMTVNPGFGGQQLIESTIPKIRQAKALIG 166


>gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 493

 Score = 21.9 bits (45), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 159 IMDKLKGIDVKITRLAYGIPMGSELDYL 186
           + D  + +D  I  +  GIP    LDYL
Sbjct: 250 VPDYERALDQSIQGMTVGIPKEYRLDYL 277


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.139    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,796
Number of Sequences: 1233
Number of extensions: 4637
Number of successful extensions: 14
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 8
length of query: 201
length of database: 328,796
effective HSP length: 70
effective length of query: 131
effective length of database: 242,486
effective search space: 31765666
effective search space used: 31765666
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)