Query gi|254780763|ref|YP_003065176.1| hypothetical protein CLIBASIA_03260 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 107
No_of_seqs 107 out of 1265
Neff 6.1
Searched_HMMs 33803
Date Wed Jun 1 13:56:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780763.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1j8b_A YBAB; hypothetical pro 99.9 3.4E-27 1E-31 194.1 11.1 106 1-107 7-112 (112)
2 >3f42_A Protein HP0035; helico 99.9 3.1E-26 9.2E-31 188.1 13.7 98 1-103 2-99 (99)
3 >1ybx_A Conserved hypothetical 99.9 5E-26 1.5E-30 186.7 13.4 103 1-103 40-142 (143)
4 >1ybx_A Conserved hypothetical 91.7 0.068 2E-06 33.6 1.4 100 2-107 34-140 (143)
5 >1j8b_A YBAB; hypothetical pro 90.7 0.057 1.7E-06 34.1 0.2 92 10-107 9-106 (112)
6 >3brc_A Conserved protein of u 57.8 11 0.00031 19.7 3.2 48 33-82 69-116 (120)
7 >3h7f_A Serine hydroxymethyltr 56.3 5.1 0.00015 21.7 1.4 47 59-105 153-199 (205)
8 >1lr0_A TOLA protein; domain-s 54.5 19 0.00055 18.1 4.8 37 38-78 55-91 (129)
9 >1vqz_A Lipoate-protein ligase 48.4 23 0.00069 17.5 4.4 53 29-81 10-69 (90)
10 >2bv4_A Lectin CV-IIL; mannose 46.0 25 0.00075 17.3 4.0 31 29-59 52-82 (113)
11 >2chh_A Protein RSC3288; lecti 43.0 28 0.00084 17.0 4.0 28 29-56 53-80 (114)
12 >2wra_A Lectin, BCLA; sugar bi 31.2 44 0.0013 15.8 4.0 27 29-55 59-85 (128)
13 >1uzv_A Pseudomonas aeruginosa 28.9 48 0.0014 15.6 3.0 28 32-59 55-83 (114)
14 >1h2i_A RAD52, DNA repair prot 27.7 50 0.0015 15.4 4.3 46 38-83 43-88 (95)
15 >2ia9_A Putative septation pro 24.0 58 0.0017 15.0 3.6 29 60-88 68-96 (100)
16 >1k8k_A ARP3, actin-like prote 23.4 60 0.0018 14.9 4.8 73 28-104 21-100 (140)
17 >3a7r_A Lipoate-protein ligase 23.3 60 0.0018 14.9 3.9 54 29-82 10-70 (93)
18 >1zq1_C Glutamyl-tRNA(Gln) ami 23.1 20 0.0006 17.9 0.0 80 17-96 70-149 (177)
19 >1vqu_A Anthranilate phosphori 21.8 59 0.0018 14.9 2.2 47 13-59 19-74 (79)
20 >1qmh_A RNA 3'-terminal phosph 21.7 50 0.0015 15.4 1.8 36 34-73 163-198 (254)
21 >1ml8_A Hypothetical protein ( 21.5 59 0.0018 15.0 2.1 22 25-47 8-29 (31)
No 1
>>1j8b_A YBAB; hypothetical protein, structural genomics, structure 2 function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae rd KW20} (A:)
Probab=99.95 E-value=3.4e-27 Score=194.13 Aligned_cols=106 Identities=41% Similarity=0.662 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK 80 (107)
Q Consensus 1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~ 80 (107)
|.|+++|+++||+||++++++|++|+..+|+++|++|+|+||+||+++|++|+|||+++. +|++.|+++|++|+|+|++
T Consensus 7 ~~n~~~m~~~aq~~q~~~~~~q~el~~~~~~~~s~dG~V~Vtv~g~g~v~~i~I~~~~~~-~d~e~L~~~i~~A~n~A~~ 85 (112)
T 1j8b_A 7 KGGLGGLXKQAQQXQEKXQKXQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLXE-DDKEXLEDLIAAAFNDAVR 85 (112)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGG-SCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEEEEECCCEEEEEEECHHHHC-CCHHHHHHHHHHHHHHHHH
T ss_conf 769999999999999999999999856099999779769999977827999998677714-7899999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999999999999744899899999998
Q gi|254780763|r 81 KIEDLVATKTQEITEGLPIPPGLKFPF 107 (107)
Q Consensus 81 k~~~~~~~~m~~~tggl~lp~g~~lPf 107 (107)
++++..+++|.++|||+++|++.+|||
T Consensus 86 ~a~~~~~~~~~~l~g~~~lPg~~~~~~ 112 (112)
T 1j8b_A 86 RAEELQKEKXASVTAGXPLPPGXKFPF 112 (112)
T ss_dssp HHHHHHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999999999857999998999997
No 2
>>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori} (A:)
Probab=99.94 E-value=3.1e-26 Score=188.05 Aligned_cols=98 Identities=22% Similarity=0.335 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK 80 (107)
Q Consensus 1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~ 80 (107)
|+||++||+|||+||++++++|++|++.+|+|+|++|+|+||+||+++|++|+|||+++ +|+++|||+|++|||+|++
T Consensus 2 ~~n~~~mlkqaq~~q~~~~~~q~el~~~~~~g~s~~g~V~V~~~G~~~i~~i~Id~~~l--~d~e~Ledli~~A~N~A~~ 79 (99)
T 3f42_A 2 HXDFSQLGGLLDGXKKEFSQLEEKNKDTIHTSKSGGGXVSVSFNGLGELVDLQIDDSLL--EDKEAXQIYLXSALNDGYK 79 (99)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEGGGTEEEEEETTSCEEEEEECGGGG--GCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHH--CCHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999999999984739999977988999998795499999897890--8899999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999974489989999
Q gi|254780763|r 81 KIEDLVATKTQEITEGLPIPPGL 103 (107)
Q Consensus 81 k~~~~~~~~m~~~tggl~lp~g~ 103 (107)
++++.++++|+++|||| |||
T Consensus 80 ka~~~~~~~m~~~~g~l---pG~ 99 (99)
T 3f42_A 80 AVEENRKNLAFNXLGNF---AKL 99 (99)
T ss_dssp HHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHCCC---CCC
T ss_conf 99999999999986575---799
No 3
>>1ybx_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MSE; 1.80A {Clostridium thermocellum} (A:)
Probab=99.94 E-value=5e-26 Score=186.72 Aligned_cols=103 Identities=34% Similarity=0.519 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK 80 (107)
Q Consensus 1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~ 80 (107)
+.|+.+|++++|++|++++++|++|+..+|+++|++|+|+||++|+++|++|+|||++++++|++.|+++|++|||+|.+
T Consensus 40 ~~dl~~mlk~aq~~q~~l~~~q~eL~~~~~~g~S~~GlV~Vtv~G~g~v~~I~Idp~~l~~~d~e~L~~lI~~Ain~A~~ 119 (143)
T 1ybx_A 40 GGNINNLVKQAQKXQRDXERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEXLQDLILAAVNEALR 119 (143)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 74799999999999999999999984569999978986999997790589998688984965699999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999974489989999
Q gi|254780763|r 81 KIEDLVATKTQEITEGLPIPPGL 103 (107)
Q Consensus 81 k~~~~~~~~m~~~tggl~lp~g~ 103 (107)
++++..+++|.++||||++||||
T Consensus 120 ~a~~~~~e~m~~l~g~l~lppGm 142 (143)
T 1ybx_A 120 KADEXVTAEISKITGGLGGIPGL 142 (143)
T ss_dssp HHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999986799999988
No 4
>>1ybx_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MSE; 1.80A {Clostridium thermocellum} (A:)
Probab=91.73 E-value=0.068 Score=33.61 Aligned_cols=100 Identities=10% Similarity=-0.001 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHH--CC-CCHHHHH----HHHHHHH
Q ss_conf 217999999999999999999998530899997698499999648307468864788--29-1006899----9999999
Q gi|254780763|r 2 SNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSL--LF-EDNVEIL----EDLIIAA 74 (107)
Q Consensus 2 ~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~--l~-~~d~e~L----edli~~A 74 (107)
+-+..++....+|.++++++|+++.+..-+-.. ++++.......+.|++|... .+ .-|++.+ .+.+.++
T Consensus 34 ~~~~~~~~dl~~mlk~aq~~q~~l~~~q~eL~~----~~~~g~S~~GlV~Vtv~G~g~v~~I~Idp~~l~~~d~e~L~~l 109 (143)
T 1ybx_A 34 GGFPGFGGNINNLVKQAQKXQRDXERVQEELKE----KTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEXLQDL 109 (143)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHH----CEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC----CEEEEEECCCEEEEEEECCCEEEEEEECHHHCCCCCHHHHHHH
T ss_conf 899998747999999999999999999999845----6999997898699999779058999868898496569999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999999999999999999744899899999998
Q gi|254780763|r 75 HSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107 (107)
Q Consensus 75 ~N~A~~k~~~~~~~~m~~~tggl~lp~g~~lPf 107 (107)
+.+|+..+.+.+++.+....+. +.+||.+|.
T Consensus 110 I~~Ain~A~~~a~~~~~e~m~~--l~g~l~lpp 140 (143)
T 1ybx_A 110 ILAAVNEALRKADEXVTAEISK--ITGGLGGIP 140 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCC
T ss_conf 9999999999999999999999--867999999
No 5
>>1j8b_A YBAB; hypothetical protein, structural genomics, structure 2 function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae rd KW20} (A:)
Probab=90.70 E-value=0.057 Score=34.08 Aligned_cols=92 Identities=10% Similarity=0.111 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHH--CC-CCHHHHH---HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999998530899997698499999648307468864788--29-1006899---9999999999999999
Q gi|254780763|r 10 QFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSL--LF-EDNVEIL---EDLIIAAHSDAHKKIE 83 (107)
Q Consensus 10 qaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~--l~-~~d~e~L---edli~~A~N~A~~k~~ 83 (107)
..++|.++++++|+++....-+-. .++|+.+...-.++|+++... .+ .-|.+.+ -+.+-.++-.|+..+.
T Consensus 9 n~~~m~~~aq~~q~~~~~~q~el~----~~~~~~~s~dG~V~Vtv~g~g~v~~i~I~~~~~~~d~e~L~~~i~~A~n~A~ 84 (112)
T 1j8b_A 9 GLGGLXKQAQQXQEKXQKXQEEIA----QLEVTGESGAGLVKITINGAHNCRRIDIDPSLXEDDKEXLEDLIAAAFNDAV 84 (112)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHT----TSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH----CEEEEEEECCCEEEEEEECCCEEEEEEECHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999985----6099999779769999977827999998677714789999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999999999744899899999998
Q gi|254780763|r 84 DLVATKTQEITEGLPIPPGLKFPF 107 (107)
Q Consensus 84 ~~~~~~m~~~tggl~lp~g~~lPf 107 (107)
+.+++.+...... +.+|++||+
T Consensus 85 ~~a~~~~~~~~~~--l~g~~~lPg 106 (112)
T 1j8b_A 85 RRAEELQKEKXAS--VTAGXPLPP 106 (112)
T ss_dssp HHHHHHHHHHHHH--HTCC-----
T ss_pred HHHHHHHHHHHHH--HHCCCCCCC
T ss_conf 9999999999999--857999998
No 6
>>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, structural genomics, MCSG, PSI-2; 1.60A {Methanothermobacterthermautotrophicus str} (A:37-156)
Probab=57.79 E-value=11 Score=19.71 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=39.0
Q ss_pred EECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97698499999648307468864788291006899999999999999999
Q gi|254780763|r 33 NAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKI 82 (107)
Q Consensus 33 ~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~ 82 (107)
--|.|-.-|.+++++.|+.-.++|+-+= .++.+|+.+..-.++|++++
T Consensus 69 vPGSGSmLvimD~kgRiLTaslSPssii--Hk~~ie~~v~~E~~eAL~ri 116 (120)
T 3brc_A 69 VPGSGSLLVIXDSRGRLLSAAXSPPHVI--HSXEVREAVRSEXTHALERI 116 (120)
T ss_dssp STTSCEEEEEEETTSCEEEEEEECCTTT--SCCCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCEEEECCCCHHHH--HHCCHHHHHHHHHHHHHHHH
T ss_conf 8987627999838876876227911543--12229999999999999984
No 7
>>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} (A:1-54,A:297-447)
Probab=56.31 E-value=5.1 Score=21.72 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 29100689999999999999999999999999997448998999999
Q gi|254780763|r 59 LFEDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKF 105 (107)
Q Consensus 59 l~~~d~e~Ledli~~A~N~A~~k~~~~~~~~m~~~tggl~lp~g~~l 105 (107)
+.++|-+.+-++|..|+.......-+..+++...+++-+|++||+.-
T Consensus 153 ~~e~d~~~IA~lI~~~l~~~~~~~i~~ir~~V~~l~~~fPiy~~~~e 199 (205)
T 3h7f_A 153 FGDTEFTEVADIIATALATGSSVDVSALKDRATRLARAFPLYDGLEE 199 (205)
T ss_dssp CCHHHHHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHHSCSSTTGGG
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 98899999999999998538867799999999999984899999334
No 8
>>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A {Pseudomonas aeruginosa} (A:)
Probab=54.55 E-value=19 Score=18.13 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=27.9
Q ss_pred EEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 49999964830746886478829100689999999999999
Q gi|254780763|r 38 MVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDA 78 (107)
Q Consensus 38 ~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A 78 (107)
.|.++++.+|+|.+++|..+ ..-..|.+.++.|+..+
T Consensus 55 ~V~~~i~~dG~V~~~~i~~s----SG~~~ld~aa~~Av~~~ 91 (129)
T 1lr0_A 55 EVLIEXLPDGTITNASVSRS----SGDKPFDSSAVAAVRNV 91 (129)
T ss_dssp EEEEEECTTSBEEEEEEEEC----CSCHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCEEECCCCCC----CCCHHHHHHHHHHHHHH
T ss_conf 99999927998832202357----86789999999999985
No 9
>>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} (A:252-341)
Probab=48.38 E-value=23 Score=17.52 Aligned_cols=53 Identities=21% Similarity=0.188 Sum_probs=41.8
Q ss_pred EEEEEECCCEEEEEEE-CCCCEEEEEECHHHCCCCHHHHHHHHHH------HHHHHHHHH
Q ss_conf 8999976984999996-4830746886478829100689999999------999999999
Q gi|254780763|r 29 EAEGNAGGGMVSVRIN-GKNMLTGVKIDRSLLFEDNVEILEDLII------AAHSDAHKK 81 (107)
Q Consensus 29 ~v~g~sg~g~V~V~~~-G~~~i~~i~Id~~~l~~~d~e~Ledli~------~A~N~A~~k 81 (107)
+.+..-..|.|.+-++ -++.|++++|.-+++.+.+.+.|+..+. +++.+|+..
T Consensus 10 ~~~~rF~~G~ve~~l~v~~G~I~~~ki~gDfl~~~~i~~le~~L~G~~y~~~~i~~~L~~ 69 (90)
T 1vqz_A 10 RRGIKFTSGKVEVFANVTESKIQDIKIYGDFFGIEDVAAVEDVLRGVKYEREDVLKALKT 69 (90)
T ss_dssp EEEEEETTEEEEEEEEEETTEEEEEEEEESCCCSSCTHHHHHHHTTCBSSHHHHHHHHTT
T ss_pred EEEECCCCCEEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 885125783799999981699999999778888222999999867985789999999972
No 10
>>2bv4_A Lectin CV-IIL; mannose; HET: MMA; 1.0A {Chromobacterium violaceum} PDB: 2boi_A* (A:)
Probab=45.98 E-value=25 Score=17.28 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=24.5
Q ss_pred EEEEEECCCEEEEEEECCCCEEEEEECHHHC
Q ss_conf 8999976984999996483074688647882
Q gi|254780763|r 29 EAEGNAGGGMVSVRINGKNMLTGVKIDRSLL 59 (107)
Q Consensus 29 ~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l 59 (107)
+..-.||.|.|+|.+.++++..++.-..-.+
T Consensus 52 t~~l~Sg~GkVriev~~nGkps~l~s~q~~l 82 (113)
T 2bv4_A 52 TKVINSGSGNVRVQITANGRQSDLVSSQLVL 82 (113)
T ss_dssp EEEEECTTSEEEEEEEETTEECEEEEEEEEE
T ss_pred EEEEECCCCEEEEEEEECCCCCCCEECCCCC
T ss_conf 1899669970999998599435320011134
No 11
>>2chh_A Protein RSC3288; lectin, sugar-binding protein, D-mannose, plant pathogen, hypothetical protein; HET: MAN BMA; 1.0A {Ralstonia solanacearum} (A:)
Probab=42.96 E-value=28 Score=16.99 Aligned_cols=28 Identities=11% Similarity=0.253 Sum_probs=22.7
Q ss_pred EEEEEECCCEEEEEEECCCCEEEEEECH
Q ss_conf 8999976984999996483074688647
Q gi|254780763|r 29 EAEGNAGGGMVSVRINGKNMLTGVKIDR 56 (107)
Q Consensus 29 ~v~g~sg~g~V~V~~~G~~~i~~i~Id~ 56 (107)
+..-.||.|.|+|.+.++++...+.-..
T Consensus 53 t~~l~Sg~GkVriev~~nGkps~l~s~q 80 (114)
T 2chh_A 53 SQVLNSGSGAIKIQVSVNGKPSDLVSNQ 80 (114)
T ss_dssp EEEEECTTSEEEEEEEETTEECEEEEEE
T ss_pred EEEEECCCCCEEEEEEECCCCCCCEEEE
T ss_conf 2899669970999998599434300000
No 12
>>2wra_A Lectin, BCLA; sugar binding protein, bacterial lectin, oligosaccharides; HET: MAN; 1.10A {Burkholderia cenocepacia} PDB: 2wr9_A* 2vnv_A* (A:)
Probab=31.17 E-value=44 Score=15.81 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=22.2
Q ss_pred EEEEEECCCEEEEEEECCCCEEEEEEC
Q ss_conf 899997698499999648307468864
Q gi|254780763|r 29 EAEGNAGGGMVSVRINGKNMLTGVKID 55 (107)
Q Consensus 29 ~v~g~sg~g~V~V~~~G~~~i~~i~Id 55 (107)
+..-.||.|.|+|.+.++++...+.-.
T Consensus 59 t~~l~Sg~GkVriev~~nGkps~l~s~ 85 (128)
T 2wra_A 59 EATLNSGNGKIRFEVSVNGKPSATDAR 85 (128)
T ss_dssp EEEEECTTSEEEEEEEETTEECEEEEE
T ss_pred EEEEECCCCEEEEEEEECCCCCCCEEE
T ss_conf 088865997099999848940410002
No 13
>>1uzv_A Pseudomonas aeruginosa lectin II; fucose, calcium; HET: FUC; 1.0A {Pseudomonas aeruginosa} (A:)
Probab=28.89 E-value=48 Score=15.56 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=21.4
Q ss_pred EEECC-CEEEEEEECCCCEEEEEECHHHC
Q ss_conf 99769-84999996483074688647882
Q gi|254780763|r 32 GNAGG-GMVSVRINGKNMLTGVKIDRSLL 59 (107)
Q Consensus 32 g~sg~-g~V~V~~~G~~~i~~i~Id~~~l 59 (107)
-.||. |.|+|.+.++++..++.-....+
T Consensus 55 lnSG~~GkVriev~~nGKps~l~s~~~~l 83 (114)
T 1uzv_A 55 LNSGSSGKVQVQVSVNGRPSDLVSAQVIL 83 (114)
T ss_dssp EECTTTCEEEEEEEETTEECEEEEEEEEE
T ss_pred EECCCCCEEEEEEEECCCCCCCEECCCCC
T ss_conf 72489866999998489434331110024
No 14
>>1h2i_A RAD52, DNA repair protein RAD52 homolog; DNA-binding protein, DNA recombination; HET: DNA; 2.7A {Homo sapiens} (A:68-162)
Probab=27.68 E-value=50 Score=15.43 Aligned_cols=46 Identities=20% Similarity=0.116 Sum_probs=27.1
Q ss_pred EEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4999996483074688647882910068999999999999999999
Q gi|254780763|r 38 MVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKIE 83 (107)
Q Consensus 38 ~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~~ 83 (107)
.|+|++.---...++=+-..--.+.....++..-.+|+.||++++=
T Consensus 43 ~Vrvtlkdgt~~e~~G~G~~~~~~~k~~a~~kaKKeAvtDAlKral 88 (95)
T 1h2i_A 43 FVRVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRAL 88 (95)
T ss_dssp EEEEEETTSCEEEEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999996666985455665677565321078898764527999999
No 15
>>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} (A:)
Probab=24.03 E-value=58 Score=15.01 Aligned_cols=29 Identities=3% Similarity=-0.082 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 91006899999999999999999999999
Q gi|254780763|r 60 FEDNVEILEDLIIAAHSDAHKKIEDLVAT 88 (107)
Q Consensus 60 ~~~d~e~Ledli~~A~N~A~~k~~~~~~~ 88 (107)
+++=.+.|++.|+.||..++.+.....++
T Consensus 68 t~e~Re~i~~aVl~aY~~~~~~~~~~~~~ 96 (100)
T 2ia9_A 68 NSSTRGKIQDAVLNEYHRLGDTEALEFEE 96 (100)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999977542332320
No 16
>>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} (A:144-195,A:285-372)
Probab=23.38 E-value=60 Score=14.93 Aligned_cols=73 Identities=10% Similarity=0.126 Sum_probs=48.8
Q ss_pred EEEEEEECCCEEEEEEECCCCEEE---EEEC-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCCC
Q ss_conf 089999769849999964830746---8864-7882910068999999999999999999999999999---74489989
Q gi|254780763|r 28 LEAEGNAGGGMVSVRINGKNMLTG---VKID-RSLLFEDNVEILEDLIIAAHSDAHKKIEDLVATKTQE---ITEGLPIP 100 (107)
Q Consensus 28 ~~v~g~sg~g~V~V~~~G~~~i~~---i~Id-~~~l~~~d~e~Ledli~~A~N~A~~k~~~~~~~~m~~---~tggl~lp 100 (107)
+=+...||+|.-.++==-++.+.. .++| ||+++|++..-|.++|..++...=... ...+-+ ++||--+.
T Consensus 21 tG~VvdsG~g~t~~vPv~eG~~l~~a~~r~~iPELF~P~~~~Gi~~li~~sI~~cd~d~----R~~L~~NIVLsGGsTl~ 96 (140)
T 1k8k_A 21 TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIPEFANPDFTQPISEVVDEVIQNCPIDV----RRPLYKNIVLSGGSTMF 96 (140)
T ss_dssp CEEEEEESSSCEEEEEEETTEECGGGCEEESCGGGTCTTCCCCHHHHHHHHHHHSCGGG----TTHHHHCEEEESGGGCS
T ss_pred EEEEEECCCCCEEEEEEECCEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCHHH----HHHHHCCEEEECCCCCC
T ss_conf 48999827994688776778883554599855200288665443899999987488766----54232588997763568
Q ss_pred CCCC
Q ss_conf 9999
Q gi|254780763|r 101 PGLK 104 (107)
Q Consensus 101 ~g~~ 104 (107)
|||.
T Consensus 97 pGf~ 100 (140)
T 1k8k_A 97 RDFG 100 (140)
T ss_dssp TTHH
T ss_pred CCHH
T ss_conf 5889
No 17
>>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* (A:245-337)
Probab=23.31 E-value=60 Score=14.92 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=41.0
Q ss_pred EEEEEECCCEEEEEEE-CCCCEEEEEECHHHCCCCHHHHHHHHHH------HHHHHHHHHH
Q ss_conf 8999976984999996-4830746886478829100689999999------9999999999
Q gi|254780763|r 29 EAEGNAGGGMVSVRIN-GKNMLTGVKIDRSLLFEDNVEILEDLII------AAHSDAHKKI 82 (107)
Q Consensus 29 ~v~g~sg~g~V~V~~~-G~~~i~~i~Id~~~l~~~d~e~Ledli~------~A~N~A~~k~ 82 (107)
+.+..-.+|.|.|-++ =++.|++++|--+++.+.+.+.|+..+. .++.+++...
T Consensus 10 ~~~~rF~~G~ve~~l~V~~G~I~~~ki~gDf~~~~~i~~le~~L~G~~y~~~~i~~~l~~~ 70 (93)
T 3a7r_A 10 LLDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEAL 70 (93)
T ss_dssp EEEEEETTEEEEEEEEEETTEEEEEEEEECCSCCHHHHHHHHHTTTCBSSHHHHHHHHHHT
T ss_pred HHHHCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 4221178854999999839999999997577871149999999779987899999999988
No 18
>>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} (C:457-633)
Probab=23.10 E-value=20 Score=17.93 Aligned_cols=80 Identities=6% Similarity=-0.125 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999853089999769849999964830746886478829100689999999999999999999999999997448
Q gi|254780763|r 17 KMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEG 96 (107)
Q Consensus 17 ~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~~~~~~~~m~~~tgg 96 (107)
.+..+-+.+.+.+++..+.-...+-.+.+.+.-..--|..-.+..-+-+.|++++.+++.+.......-....++.+.|-
T Consensus 70 ~l~~l~~~~~~~~it~~~ak~~l~~~~~~~~~~~~~ii~~~~~~~isd~el~~~v~~vi~~~~~~~~~gk~k~~~~lvG~ 149 (177)
T 1zq1_C 70 HIREAFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQNIEVVKAKGMGAMGLIMGR 149 (177)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHH
T ss_conf 99999999976914699999999999748998999999967991479999999999999979999983415772245999
No 19
>>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Nostoc SP} (A:215-293)
Probab=21.81 E-value=59 Score=14.95 Aligned_cols=47 Identities=6% Similarity=0.056 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHEEE-EEEECCCEEEEEEE--------CCCCEEEEEECHHHC
Q ss_conf 999999999999853089-99976984999996--------483074688647882
Q gi|254780763|r 13 EIQGKMEKMKESITSLEA-EGNAGGGMVSVRIN--------GKNMLTGVKIDRSLL 59 (107)
Q Consensus 13 ~mq~~m~~~q~eL~~~~v-~g~sg~g~V~V~~~--------G~~~i~~i~Id~~~l 59 (107)
.+.+.+.++-++|...+. ...+.+|+-.+... -++++.+..|||+-+
T Consensus 19 ~~~~~~a~~l~~lg~~ra~Vv~G~~G~DE~s~~~~t~v~~~~~g~i~~~~i~P~~~ 74 (79)
T 1vqu_A 19 KLLTTVAQALDNLGKQKAIVLHGRERLDEAGLGDLTDLAVLSDGELQLTTINPQEV 74 (79)
T ss_dssp GGHHHHHHHHHHTTCSEEEEEEETTTBSSCCSSSCEEEEEEETTEEEEEEECGGGG
T ss_pred HHHHHHHHHHHHCCCCHHEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEECHHHH
T ss_conf 76516899999749741021103354323344454013222047336667668992
No 20
>>1qmh_A RNA 3'-terminal phosphate cyclase; 2'3'cyclic phosphate RNA; HET: CIT; 2.1A {Escherichia coli} (A:1-186,A:280-347)
Probab=21.71 E-value=50 Score=15.43 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=29.3
Q ss_pred ECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf 7698499999648307468864788291006899999999
Q gi|254780763|r 34 AGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIA 73 (107)
Q Consensus 34 sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~ 73 (107)
.|||.|.+.+.--.++..+.+.+.++| +-|+|.++-
T Consensus 163 ~GgGeV~~~v~p~~~l~pi~l~er~vD----~~l~Dqli~ 198 (254)
T 1qmh_A 163 AGGGVVATEVSPVASFNTLQLGERAVG----EYLADQLVL 198 (254)
T ss_dssp CCCEEEEEEEECCSCCCCCBCCBCSSC----HHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCEEEECCCCC----HHHHHHHHH
T ss_conf 999869999815555686256517714----234888999
No 21
>>1ml8_A Hypothetical protein (CRP region); structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.60A {Escherichia coli} (A:1-31)
Probab=21.55 E-value=59 Score=14.96 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=17.7
Q ss_pred HHHEEEEEEECCCEEEEEEECCC
Q ss_conf 85308999976984999996483
Q gi|254780763|r 25 ITSLEAEGNAGGGMVSVRINGKN 47 (107)
Q Consensus 25 L~~~~v~g~sg~g~V~V~~~G~~ 47 (107)
++...|.|+|+.|. .|+++|..
T Consensus 8 veg~~F~ges~SGH-~VvMDG~~ 29 (31)
T 1ml8_A 8 VEGLTFLGESASGH-QILMDGNS 29 (31)
T ss_dssp EETTEEEEECTTSC-EEEEETTT
T ss_pred ECCCEEEEECCCCC-EEEECCCC
T ss_conf 08927999909999-99971799
Done!