Query gi|254780763|ref|YP_003065176.1| hypothetical protein CLIBASIA_03260 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 107
No_of_seqs 107 out of 1265
Neff 6.1
Searched_HMMs 13730
Date Wed Jun 1 06:52:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780763.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j8ba_ d.222.1.1 (A:) Hypothe 99.9 9E-26 6.6E-30 182.6 11.1 92 4-96 1-92 (92)
2 d1vqza1 d.224.1.3 (A:242-329) 45.4 11 0.00077 17.2 4.4 53 30-82 9-68 (88)
3 d1x2ga1 d.224.1.3 (A:247-337) 40.3 13 0.00092 16.7 4.5 55 29-83 8-69 (91)
4 d1lr0a_ d.212.1.1 (A:) TolA {P 38.3 14 0.00099 16.5 4.8 38 37-78 52-89 (126)
5 d1kn0a_ d.50.1.3 (A:) The homo 33.0 16 0.0012 16.0 4.8 23 61-83 109-131 (184)
6 d2chha1 b.115.1.1 (A:1-113) Ma 32.0 17 0.0012 15.9 4.0 28 29-56 52-79 (113)
7 d1uzva_ b.115.1.1 (A:) Fucose- 30.2 18 0.0013 15.7 3.0 25 32-56 55-80 (114)
8 d2nn6c2 d.101.1.1 (C:188-276) 24.6 23 0.0017 15.1 5.0 44 33-78 29-72 (89)
9 d1a6qa1 a.159.1.1 (A:297-368) 19.6 27 0.002 14.6 2.1 50 54-105 1-55 (72)
10 d1tola2 d.212.1.1 (A:125-216) 19.3 29 0.0021 14.4 3.9 32 38-75 32-63 (92)
No 1
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}
Probab=99.93 E-value=9e-26 Score=182.63 Aligned_cols=92 Identities=40% Similarity=0.621 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999985308999976984999996483074688647882910068999999999999999999
Q gi|254780763|r 4 IMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKIE 83 (107)
Q Consensus 4 m~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~~ 83 (107)
|++||+|||+||++|+++|++|++.+|+|+||+|+|+|++||+++|++|+|||++++ +|+++|||||++|||+|+++++
T Consensus 1 m~~mmkqaq~mq~~m~~~q~eL~~~~v~~~sg~g~V~V~~~G~~~v~~i~Id~~~l~-~d~e~LedlI~~A~N~A~~k~~ 79 (92)
T d1j8ba_ 1 LGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLME-DDKEMLEDLIAAAFNDAVRRAE 79 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGG-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEEEEECCEEEEEEEECHHHHC-CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 968999999999999999999747299999879879999988867999998878702-7599999999999999999999
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999997448
Q gi|254780763|r 84 DLVATKTQEITEG 96 (107)
Q Consensus 84 ~~~~~~m~~~tgg 96 (107)
+.++++|+++|||
T Consensus 80 ~~~~~~m~~~tGG 92 (92)
T d1j8ba_ 80 ELQKEKMASVTAG 92 (92)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999998755399
No 2
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=45.38 E-value=11 Score=17.22 Aligned_cols=53 Identities=23% Similarity=0.211 Sum_probs=41.0
Q ss_pred EEEEECCCEEEEEEE-CCCCEEEEEECHHHCCCCHHHHHHHHHH------HHHHHHHHHH
Q ss_conf 999976984999996-4830746886478829100689999999------9999999999
Q gi|254780763|r 30 AEGNAGGGMVSVRIN-GKNMLTGVKIDRSLLFEDNVEILEDLII------AAHSDAHKKI 82 (107)
Q Consensus 30 v~g~sg~g~V~V~~~-G~~~i~~i~Id~~~l~~~d~e~Ledli~------~A~N~A~~k~ 82 (107)
.+-.-.+|.|.|.++ -++.|++++|--+++.+.|.+.|+..+. .++.+++..+
T Consensus 9 ~~~rf~~G~vev~l~V~~G~I~~iki~GDff~~~~i~~le~~L~G~~y~~~~i~~~L~~~ 68 (88)
T d1vqza1 9 RGIKFTSGKVEVFANVTESKIQDIKIYGDFFGIEDVAAVEDVLRGVKYEREDVLKALKTI 68 (88)
T ss_dssp EEEEETTEEEEEEEEEETTEEEEEEEEESCCCSSCTHHHHHHHTTCBSSHHHHHHHHTTS
T ss_pred EEEECCCCEEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 111758867999999818989799998047993129999999769977899999999848
No 3
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=40.30 E-value=13 Score=16.73 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=42.4
Q ss_pred EEEEEECCCEEEEEEE-CCCCEEEEEECHHHCCCCHHHHHHHHHH------HHHHHHHHHHH
Q ss_conf 8999976984999996-4830746886478829100689999999------99999999999
Q gi|254780763|r 29 EAEGNAGGGMVSVRIN-GKNMLTGVKIDRSLLFEDNVEILEDLII------AAHSDAHKKIE 83 (107)
Q Consensus 29 ~v~g~sg~g~V~V~~~-G~~~i~~i~Id~~~l~~~d~e~Ledli~------~A~N~A~~k~~ 83 (107)
..+..-.+|.|.+.++ =+|.|++++|--+++.+.+.+.|+..+. .++..++....
T Consensus 8 ~~~~rF~~G~ve~~l~V~~G~I~~~~i~gDfl~~~~i~~le~~L~G~~y~~~~i~~~l~~~~ 69 (91)
T d1x2ga1 8 LLDERFTWGGVELHFDVEKGHITRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALL 69 (91)
T ss_dssp EEEEEETTEEEEEEEEEETTEEEEEEEEECCSCCHHHHHHHHHHTTCBSSHHHHHHHHHHTG
T ss_pred EHEEECCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 21026377169999997279898999986889927899999997699868999999999987
No 4
>d1lr0a_ d.212.1.1 (A:) TolA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=38.25 E-value=14 Score=16.53 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=24.6
Q ss_pred CEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 849999964830746886478829100689999999999999
Q gi|254780763|r 37 GMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDA 78 (107)
Q Consensus 37 g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A 78 (107)
-.|+++++.+|.|.+++|..+ ..+ ..+.+.++.|+..|
T Consensus 52 v~v~~~i~~dG~v~~~~i~~s---SG~-~~~D~sa~~Av~~a 89 (126)
T d1lr0a_ 52 VEVLIEMLPDGTITNASVSRS---SGD-KPFDSSAVAAVRNV 89 (126)
T ss_dssp EEEEEEECTTSBEEEEEEEEC---CSC-HHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCEEEEEEECC---CCC-HHHHHHHHHHHHHH
T ss_conf 999999918998953032047---876-67899999999985
No 5
>d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52 recombinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.00 E-value=16 Score=16.00 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10068999999999999999999
Q gi|254780763|r 61 EDNVEILEDLIIAAHSDAHKKIE 83 (107)
Q Consensus 61 ~~d~e~Ledli~~A~N~A~~k~~ 83 (107)
+.+...+++.+.+|+.||++++-
T Consensus 109 ~~k~~a~~~a~KeA~TDAlKRA~ 131 (184)
T d1kn0a_ 109 KSKALSLEKARKEAVTDGLKRAL 131 (184)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 20245678898888879999999
No 6
>d2chha1 b.115.1.1 (A:1-113) Mannose-specific lectin RS-IIL {Ralstonia solanacearum [TaxId: 305]}
Probab=32.02 E-value=17 Score=15.90 Aligned_cols=28 Identities=11% Similarity=0.253 Sum_probs=22.2
Q ss_pred EEEEEECCCEEEEEEECCCCEEEEEECH
Q ss_conf 8999976984999996483074688647
Q gi|254780763|r 29 EAEGNAGGGMVSVRINGKNMLTGVKIDR 56 (107)
Q Consensus 29 ~v~g~sg~g~V~V~~~G~~~i~~i~Id~ 56 (107)
+..-.||.|.|+|.+.++++...+.-..
T Consensus 52 t~~l~Sg~GkVri~v~~nGkps~l~s~q 79 (113)
T d2chha1 52 SQVLNSGSGAIKIQVSVNGKPSDLVSNQ 79 (113)
T ss_dssp EEEEECTTSEEEEEEEETTEECEEEEEE
T ss_pred EEEEECCCCCEEEEEEECCCCCCCHHHH
T ss_conf 3999669981999999599435300100
No 7
>d1uzva_ b.115.1.1 (A:) Fucose-binding lectin II (PA-LII) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=30.17 E-value=18 Score=15.70 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=20.1
Q ss_pred EEEC-CCEEEEEEECCCCEEEEEECH
Q ss_conf 9976-984999996483074688647
Q gi|254780763|r 32 GNAG-GGMVSVRINGKNMLTGVKIDR 56 (107)
Q Consensus 32 g~sg-~g~V~V~~~G~~~i~~i~Id~ 56 (107)
-.|| +|.|+|.+.++++..++.-..
T Consensus 55 l~SG~~GkVrieV~~nGkps~l~s~q 80 (114)
T d1uzva_ 55 LNSGSSGKVQVQVSVNGRPSDLVSAQ 80 (114)
T ss_dssp EECTTTCEEEEEEEETTEECEEEEEE
T ss_pred EECCCCCEEEEEEEECCCCCCCEECC
T ss_conf 82489865999999599445220110
No 8
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.58 E-value=23 Score=15.07 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=29.2
Q ss_pred EECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9769849999964830746886478829100689999999999999
Q gi|254780763|r 33 NAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDA 78 (107)
Q Consensus 33 ~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A 78 (107)
+.+++.++|++|.++++..+.-.-.. +-+.+.|..++-.|...+
T Consensus 29 ~~~~~~lti~~~~~g~i~~l~k~G~~--~l~~~~l~~~~~~A~~~~ 72 (89)
T d2nn6c2 29 HLATGTLTIVMDEEGKLCCLHKPGGS--GLTGAKLQDCMSRAVTRH 72 (89)
T ss_dssp TSCSEEEEEEECTTCCEEEEEESCCS--CCCHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEEECCCCCEEEEEECCCC--CCCHHHHHHHHHHHHHHH
T ss_conf 23885089999399989999915886--427999999999999999
No 9
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.56 E-value=27 Score=14.61 Aligned_cols=50 Identities=12% Similarity=0.267 Sum_probs=27.1
Q ss_pred ECHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHC-CC-CCCCCCCC
Q ss_conf 64788291006899999999999999999999---9999999744-89-98999999
Q gi|254780763|r 54 IDRSLLFEDNVEILEDLIIAAHSDAHKKIEDL---VATKTQEITE-GL-PIPPGLKF 105 (107)
Q Consensus 54 Id~~~l~~~d~e~Ledli~~A~N~A~~k~~~~---~~~~m~~~tg-gl-~lp~g~~l 105 (107)
++++++..+ .-|+..|..-+-+.+++.... -..-|..+.. ++ +||||-.|
T Consensus 1 Vs~EAv~kE--~eLd~~Le~~v~eii~~~~~~~~dl~~Vm~~L~~e~Ip~LPPGGGL 55 (72)
T d1a6qa1 1 VSPEAVKKE--AELDKYLECRVEEIIKKQGEGVPDLVHVMRTLASENIPSLPPGGEL 55 (72)
T ss_dssp CCHHHHHHH--HHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHTTCSSCCTTTGG
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 988999989--9999999999999998765577109999999986689999999659
No 10
>d1tola2 d.212.1.1 (A:125-216) TolA {Escherichia coli [TaxId: 562]}
Probab=19.30 E-value=29 Score=14.40 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=21.4
Q ss_pred EEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHH
Q ss_conf 49999964830746886478829100689999999999
Q gi|254780763|r 38 MVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAH 75 (107)
Q Consensus 38 ~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~ 75 (107)
.|+|+++.+|+|.+|++. + .|. .+.+.+..|+
T Consensus 32 ~v~i~l~~~G~v~~v~~s----S-G~~-~fd~sa~~Ai 63 (92)
T d1tola2 32 TLRIKLAPDGMLLDIKPE----G-GDP-ALCQAALAAA 63 (92)
T ss_dssp EEEEEECTTSCEEEEEEE----E-ECH-HHHHHHHHHH
T ss_pred EEEEEEECCCCEEEEEEC----C-CCH-HHHHHHHHHH
T ss_conf 999999678438986745----9-979-9999999999
Done!