RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780763|ref|YP_003065176.1| hypothetical protein
CLIBASIA_03260 [Candidatus Liberibacter asiaticus str. psy62]
(107 letters)
>gnl|CDD|178904 PRK00153, PRK00153, hypothetical protein; Validated.
Length = 104
Score = 106 bits (267), Expect = 1e-24
Identities = 44/101 (43%), Positives = 68/101 (67%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
M N+ ++ Q +++Q KM+KM+E + +E EG AGGG+V V + GK + VKID SL+
Sbjct: 2 MGNMQNLMKQAQQMQEKMQKMQEELAQMEVEGEAGGGLVKVTMTGKKEVKRVKIDPSLVD 61
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPP 101
++VE+LEDLI+AA +DA +K E+ + K ++T GL P
Sbjct: 62 PEDVEMLEDLILAAFNDALRKAEETMKEKMGKLTGGLLPPG 102
>gnl|CDD|161709 TIGR00103, DNA_YbaB_EbfC, DNA-binding protein, YbaB/EbfC family.
The function of this protein is unknown, but it has been
expressed and crystallized. Its gene nearly always
occurs next to recR and/or dnaX. It is restricted to
Bacteria and the plant Arabidopsis. The plant form
contains an additional N-terminal region that may serve
as a transit peptide and shows a close relationship to
the cyanobacterial member, suggesting that it is a
chloroplast protein. Members of this family are found in
a single copy per bacterial genome, but are broadly
distributed. A member is present even in the minimal
gene complement of Mycoplasm genitalium.
Length = 102
Score = 66.3 bits (162), Expect = 1e-12
Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 4/103 (3%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
N+ +++ Q +++Q KM+K++E I E G +G G+V+V ING L ++ID SLL
Sbjct: 4 KGNLGELMKQAQQMQEKMKKLQEEIAQFEVTGKSGAGLVTVTINGNLELKSIEIDPSLLE 63
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGL 103
ED E LED+I A +DA KK+E T + +T G+P+PPGL
Sbjct: 64 EDK-EALEDMITEALNDAVKKVE---ETYKELMTSGMPLPPGL 102
>gnl|CDD|184772 PRK14625, PRK14625, hypothetical protein; Provisional.
Length = 109
Score = 61.9 bits (150), Expect = 4e-11
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
M ++ ++ Q + +Q K+ + + EG +GGGMV+V + G L V +D SL+
Sbjct: 1 MKDLGGLMKQAQAMQQKLADAQARLAETTVEGTSGGGMVTVTLMGNGELVRVLMDESLVQ 60
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQE----ITEGLPIPPGLKF 105
E++ DLI+AAH+DA KK++ A QE + + PG+KF
Sbjct: 61 PGEGEVIADLIVAAHADAKKKLDAKQAQLMQEAAGPMAGLMGGLPGMKF 109
>gnl|CDD|173089 PRK14626, PRK14626, hypothetical protein; Provisional.
Length = 110
Score = 61.8 bits (150), Expect = 4e-11
Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
N+ +++ Q + I+ +EK KE + E GGGMV V NG + V+ID+SLL ED
Sbjct: 6 NLAELMKQMQSIKENVEKAKEELKKEEIVVEVGGGMVKVVSNGLGEIKDVEIDKSLLNED 65
Query: 63 NVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLP 98
E+L+DL+IAA ++A ++ ++++ K + GLP
Sbjct: 66 EYEVLKDLLIAAFNEASRRSKEVMGEKMTQAA-GLP 100
>gnl|CDD|173087 PRK14624, PRK14624, hypothetical protein; Provisional.
Length = 115
Score = 59.2 bits (143), Expect = 2e-10
Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
MS + +G +E KME++K+ I S+ G+AG GMV+V G+ +T V I++ L
Sbjct: 8 MSEALSNMGNIRE---KMEEVKKRIASIRVVGDAGAGMVTVTATGEGQITNVFINKQLFD 64
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGL 97
D+ ++LEDL++AA +DA KK ++ A + Q + GL
Sbjct: 65 ADDNKMLEDLVMAATNDALKKAKEATAYEFQNASGGL 101
>gnl|CDD|173084 PRK14621, PRK14621, hypothetical protein; Provisional.
Length = 111
Score = 56.0 bits (135), Expect = 2e-09
Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
M N+ M+ Q ++ KM+ +++ + L A G AGGGMV +NGK L + ID ++
Sbjct: 3 MPNLGDMMKQIQQAGEKMQDVQKQLEKLVAHGEAGGGMVKASVNGKQKLLSLAIDPEIM- 61
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGL 97
D+VE+++DL++AA + A ++ L + ++ G+
Sbjct: 62 -DDVEMVQDLVVAAVNSALEESAKLAQEEISKVAGGM 97
>gnl|CDD|173090 PRK14627, PRK14627, hypothetical protein; Provisional.
Length = 100
Score = 54.8 bits (131), Expect = 5e-09
Identities = 30/95 (31%), Positives = 60/95 (63%)
Query: 3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
N +++ +++Q +M+K++E + + EG AGGG ++V++NG + + I ++ D
Sbjct: 2 NQRQLMQMAQQMQRQMQKVQEELAATIVEGTAGGGAITVKMNGHREVQSITISPEVVDPD 61
Query: 63 NVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGL 97
+VE+L+DL++ A +DA +K + L + Q +T GL
Sbjct: 62 DVEMLQDLLLVAINDASRKAQQLAEERMQPLTGGL 96
>gnl|CDD|179646 PRK03762, PRK03762, hypothetical protein; Provisional.
Length = 103
Score = 52.0 bits (125), Expect = 3e-08
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
+ K+ +++Q K ++++E + E +GGG+VSV NGK + + ID SLL
Sbjct: 4 NMDFSKLGEMLEQMQKKAKQLEEENANKEFTAKSGGGLVSVSANGKGEVIDISIDDSLL- 62
Query: 61 EDNVEILEDLIIAAHSDAHKKIED 84
ED E L+ L+I+A +D +K +E+
Sbjct: 63 EDK-ESLQILLISAINDVYKMVEE 85
>gnl|CDD|173085 PRK14622, PRK14622, hypothetical protein; Provisional.
Length = 103
Score = 46.6 bits (110), Expect = 1e-06
Identities = 29/98 (29%), Positives = 52/98 (53%)
Query: 3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
+I ++ Q K+++ M KE + + E +GGG+V V +NGK +T + +D + +
Sbjct: 2 DIQYLMRQAKKLEKAMADAKEKLAEIAVEAESGGGLVKVAMNGKCEVTRLTVDPKAVDPN 61
Query: 63 NVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIP 100
+ +LEDL+ AA + A +K + T G+ IP
Sbjct: 62 DKAMLEDLVTAAVNAAVEKARTAADESMSKATGGIKIP 99
>gnl|CDD|173091 PRK14628, PRK14628, hypothetical protein; Provisional.
Length = 118
Score = 44.6 bits (105), Expect = 6e-06
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
+ + KM +E+Q K+++++ES + +E E + GGG V + + ++ID L
Sbjct: 21 LKDFAKMQ---EELQKKIQELEESFSQIEVEASVGGGAVRIVATCDRRVKDIEIDEDLK- 76
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGL 103
++ E L+DL+IA ++ +KIE + +IT+ IP +
Sbjct: 77 -EDFETLKDLLIAGMNEVMEKIEKRREEEMSKITQQFGIPGLM 118
>gnl|CDD|184771 PRK14623, PRK14623, hypothetical protein; Provisional.
Length = 106
Score = 38.6 bits (90), Expect = 3e-04
Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
++M M+G+ KE Q K+E K+ + ++ + + G++ V + + + ID LL ED
Sbjct: 2 DMMGMMGKLKEAQQKVEATKKRLDTVLIDEQSSDGLLKVTVTANREIKSISIDDELL-ED 60
Query: 63 NVEILEDLIIAAHSDAHKKIEDLVATKTQEIT-EGLPIPPGL 103
E LED ++ + A +K ++ + + EG+P PG+
Sbjct: 61 K-EQLEDYLVLTLNKAIEKATEINEAELGAVAKEGMPDIPGM 101
>gnl|CDD|173092 PRK14629, PRK14629, hypothetical protein; Provisional.
Length = 99
Score = 32.7 bits (74), Expect = 0.024
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
N + + + ++ +K+ I+ + G AG +V V +NG+ + V I +
Sbjct: 4 NPLDFLKNMSSFKDNIDNIKKEISQIVVCGRAGSDVVVVEMNGEFNVKKVSIKEEFFDDL 63
Query: 63 NVEILEDLIIAAHSDAHKKIEDLVATKT 90
+ E LE +I +A +DA K+++ + +KT
Sbjct: 64 DNEALEHMIKSAFNDAVSKVKEEIKSKT 91
>gnl|CDD|162534 TIGR01782, TonB-Xanth-Caul, TonB-dependent receptor. This model
represents a family of TonB-dependent outer-membrane
receptors which are found mainly in Xanthomonas and
Caulobacter. These appear to represent the expansion of
a paralogous family in that the 22 X. axonopodis (21 in
X. campestris) and 18 C. crescentus sequences are more
closely related to each other than any of the many
TonB-dependent receptors found in other species. In
fact, the Crescentus and Xanthomonas sequences are
inseparable on a phylogenetic tree using a PAM-weighted
neighbor-joining method, indicating that one of the two
genuses may have acquired this set of receptors from
the other. The mechanism by which this family is shared
between Xanthomonas, a gamma proteobacterial plant
pathogen and Caulobacter, an alpha proteobacterial
aquatic organism is unclear.
Length = 845
Score = 26.9 bits (60), Expect = 1.4
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 34 AGGGMVSVRINGKNMLTGVKIDRSLLFED 62
G +NG+ + + R+ +
Sbjct: 70 LGPSYNRTTLNGRTIASTDSGGRAFSLDL 98
>gnl|CDD|162469 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade
but the substrate of their pumping activity has yet to
be determined. This clade has been designated type V in.
Length = 1054
Score = 26.6 bits (59), Expect = 1.6
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 40 SVRINGKNMLTGVKIDRSL--LFEDNVEILEDLIIAAHSDAHK----KIEDLVATKTQEI 93
+V I G N LT V + R + N IL + ++ I+ + TQ
Sbjct: 675 TVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIPFASTQVE 734
Query: 94 TEGLPIPPG 102
P P G
Sbjct: 735 I---PYPLG 740
>gnl|CDD|178552 PLN02968, PLN02968, Probable N-acetyl-gamma-glutamyl-phosphate
reductase.
Length = 381
Score = 26.3 bits (58), Expect = 1.6
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 13 EIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEI 66
+ + +S+ S + + + G + TG ++ R L + EI
Sbjct: 13 ASRASVTSSPQSVVSSASSSVKSEEKKRIFVLGASGYTGAEVRRLLANHPDFEI 66
>gnl|CDD|180634 PRK06591, PRK06591, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 432
Score = 25.9 bits (57), Expect = 2.2
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 51 GVKIDRSLLFEDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITE-GLPIPPG 102
G+ I SLL D++ + +I A+++++K+ + V I GLPI P
Sbjct: 330 GIIILPSLLLADSINKIALFLIDAYNESYKREPNKVLIIIAIICSCGLPISPL 382
>gnl|CDD|163074 TIGR02923, AhaC, ATP synthase A1, C subunit. The A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The C subunit is part
of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which
is the site of ATP generation and is coupled to the
membrane-embedded proton translocating A0 complex.
Length = 343
Score = 25.9 bits (57), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 56 RSLLFEDNVEILEDLIIAAHSDAHKKIEDLVATKT-QEITEGL 97
R+ + E +EDL+I A K+I++L KT +EI E L
Sbjct: 107 RAKYANASAEEVEDLLIPAGEFLEKRIKELAEAKTIEEIVEAL 149
>gnl|CDD|161932 TIGR00564, trpE_most, anthranilate synthase component I,
non-proteobacterial lineages. A second family of TrpE
enzymes is modelled by TIGR00565. The breaking of the
TrpE family into these diverse models allows for the
separation of the models for the related enzyme, PabB.
Length = 454
Score = 25.8 bits (57), Expect = 2.4
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 58 LLFEDNVEILE--DLIIAAHSDAHKKIEDLVATKTQEITEGLPIP 100
+ E E L D + +I D++ T Q LPIP
Sbjct: 44 IKTEGGTEYLGADDRRSGIVGNPLDEIRDVMETFAQHSDPELPIP 88
>gnl|CDD|165287 PHA02984, PHA02984, hypothetical protein; Provisional.
Length = 286
Score = 25.1 bits (55), Expect = 3.8
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 47 NMLTGVKIDRSLLFEDNVEILEDLIIAA----HSDAHKKIEDLVATKT 90
N+ +G K LF+D+ +LED+II +S++ KK +++ K+
Sbjct: 171 NIFSGYKFALFRLFDDDDTLLEDIIILNGRYYNSNSMKK-VNIINIKS 217
>gnl|CDD|184044 PRK13420, PRK13420, F0F1 ATP synthase subunit A; Provisional.
Length = 226
Score = 24.7 bits (54), Expect = 5.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 82 IEDLVATKTQEITEGLPIPPGLKFPF 107
+E +V+T I E LP L PF
Sbjct: 52 LEGVVSTIEDAIKEVLPRHARLVLPF 77
>gnl|CDD|178850 PRK00083, frr, ribosome recycling factor; Reviewed.
Length = 185
Score = 24.7 bits (55), Expect = 6.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITE 95
ED ++ ED I KKI++L+A K +EI E
Sbjct: 150 EDELKRAEDEIQKLTDKYIKKIDELLAAKEKEIME 184
>gnl|CDD|148817 pfam07426, Dynactin_p22, Dynactin subunit p22. This family
contains p22, the smallest subunit of dynactin, a
complex that binds to cytoplasmic dynein and is a
required activator for cytoplasmic dynein-mediated
vesicular transport. Dynactin localizes to the cleavage
furrow and to the midbodies of dividing cells,
suggesting that it may function in cytokinesis. Family
members are approximately 170 residues long and seem to
be restricted to mammals.
Length = 172
Score = 24.4 bits (53), Expect = 7.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 79 HKKIEDLVATKTQEITEGLPIPPGLKFPF 107
+KKIEDL+ + + + +P +K F
Sbjct: 58 YKKIEDLLKYLDPQYIDRIALPDAMKLEF 86
>gnl|CDD|179258 PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.
Length = 682
Score = 23.9 bits (53), Expect = 8.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 7 MVGQFKEIQGKM 18
MVG+F E+QG M
Sbjct: 398 MVGEFPELQGIM 409
>gnl|CDD|178363 PLN02763, PLN02763, hydrolase, hydrolyzing O-glycosyl compounds.
Length = 978
Score = 23.7 bits (51), Expect = 9.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 27 SLEAEGNAGGGMVSVR--INGKNMLTGVKIDRSL 58
SL EG+ GGG+V R K+ VKI S+
Sbjct: 820 SLGLEGDIGGGLVLAREISIPKDSPKVVKISSSI 853
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.314 0.134 0.363
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,691,293
Number of extensions: 96934
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 49
Length of query: 107
Length of database: 5,994,473
Length adjustment: 73
Effective length of query: 34
Effective length of database: 4,417,089
Effective search space: 150181026
Effective search space used: 150181026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.3 bits)