HHsearch results for GI: 254780764 and protein with PDBid: 1m9s_A
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1
Probab=97.40 E-value=0.0011 Score=40.11 Aligned_cols=101 Identities=16% Similarity=0.229 Sum_probs=60.4
Q ss_pred CCCEEEEEEE----CCCEEEEEECCCEEEEEECCCCCCCCCCCCC--CCCCCCCCCC--CEEEECCCC-CCCCEEEEEC-
Q ss_conf 6962555420----1212567532530576402334654433333--4333434433--113331799-8775379973-
Q gi|254780764|r 84 KGLPVEVVKE----YENWRQIRDFDGTIGWINKSLLSGKRSAIVS--PWNRKTNNPI--YINLYKKPD-IQSIIVAKVE- 153 (194)
Q Consensus 84 ~g~~v~vi~~----~~~W~kV~~~~g~~Gwv~~~~ls~~~~~~~~--~~~~~~~~~~--~lnvR~~Ps-~~s~iv~~l~- 153 (194)
.|..++++.+ .+.||+++..+...||+..+-+......... .....++... .--++..|. +++...+.+.
T Consensus 477 ~~~~~~i~~~~~t~~~~~y~f~~~~k~iGW~d~~a~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~ 556 (605)
T 1m9s_A 477 QGKNMRILREAKTPITTWYQFSIGGKVIGWVDTRALNTFYKQSMEKPTRLTRYVSANKAGESYYKVPVADNPVKRGTLAK 556 (605)
T ss_dssp CSSCEEECCCEECSSCEEEEEEETTEEEEEEETTTEEEEEEGGGCEEEEEEEEECTTTTTSEEESSSSCCGGGEEEEGGG
T ss_pred CCCEEEEEEEEECCCCCEEEEEECCEEEEEEECCCCEECCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCEEEEEHHC
T ss_conf 57269997600426765899997992875465455300245333444213699956676765884776657445300010
Q ss_pred -CCCEEEEEEEE----CCEEEEEEC-CEEEEEECCCE
Q ss_conf -89889999520----998999989-98999971412
Q gi|254780764|r 154 -PGVLLTIRECS----GEWCFGYNL-DTEGWIKKQKI 184 (194)
Q Consensus 154 -~g~~v~i~~~~----~~W~kV~~~-g~~GWV~k~~i 184 (194)
.|..+++.+.. +.||+|+.+ +..|||.+..+
T Consensus 557 y~~~~~~v~~~a~~~~~~~y~i~~~~~~~GW~~~~~~ 593 (605)
T 1m9s_A 557 YKNQKLIVDCQATIEGQLWYRIRTSSTFIGWTKAANL 593 (605)
T ss_dssp STTCCEEEEEEEEETTEEEEEEECSSSEEEEEEGGGE
T ss_pred CCCCEEEEEEEEEECCCEEEEEEECCEEEEEEECCCC
T ss_conf 3897899999999669469999979968863541127