RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780764|ref|YP_003065177.1| hypothetical protein
CLIBASIA_03275 [Candidatus Liberibacter asiaticus str. psy62]
(194 letters)
>2kt8_A Probable surface protein; SH3 family, structural genomics,
PSI-2, protein structure initiative, northeast
structural genomics consortium; NMR {Clostridium
perfringens} (A:)
Length = 76
Score = 56.4 bits (136), Expect = 3e-09
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 58 VTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLSG 117
+ +S N R G V+ L+ V +V E + +I + G+ G++ K +
Sbjct: 6 IVNVSSSLNVREGASTSSKVI-GSLSGNTKVTIVGEEGAFYKIE-YKGSHGYVAKEYIKD 63
Query: 118 KRSAIVSPWN 127
+ ++ +
Sbjct: 64 IKDEVLEHHH 73
Score = 38.7 bits (90), Expect = 6e-04
Identities = 10/65 (15%), Positives = 23/65 (35%)
Query: 128 RKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQKIWGI 187
N +N+ + S ++ + +TI G + + G++ K+ I I
Sbjct: 5 GIVNVSSSLNVREGASTSSKVIGSLSGNTKVTIVGEEGAFYKIEYKGSHGYVAKEYIKDI 64
Query: 188 YPGEV 192
+
Sbjct: 65 KDEVL 69
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587,
CPE0606, structural genomics, PSI-2, protein structure
initiative; NMR {Clostridium perfringens} (A:)
Length = 74
Score = 54.8 bits (132), Expect = 8e-09
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 54 LPRFVTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKS 113
+ V S N R GPG Y V+ L VE++KE + W +IR F+G +G+ +KS
Sbjct: 1 MQGVVK-VNSALNMRSGPGSNYGVI-GTLRNNDKVEIIKEVDGWYEIR-FNGKVGYASKS 57
Query: 114 LLSGKRSAIVSPWN 127
++ + +
Sbjct: 58 YITIVNEGSLEHHH 71
Score = 37.9 bits (88), Expect = 0.001
Identities = 8/65 (12%), Positives = 18/65 (27%)
Query: 128 RKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQKIWGI 187
+N+ P ++ + + I + W G+ K I +
Sbjct: 3 GVVKVNSALNMRSGPGSNYGVIGTLRNNDKVEIIKEVDGWYEIRFNGKVGYASKSYITIV 62
Query: 188 YPGEV 192
G +
Sbjct: 63 NEGSL 67
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3
domain, structural genomics, protein structure
initiative; NMR {Bacillus thuringiensis
serovarkonkukian} (A:)
Length = 70
Score = 50.9 bits (122), Expect = 1e-07
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 58 VTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLS 116
I AS N R G G Y ++ L +G V+V+ E W +I ++G G+I LS
Sbjct: 5 YYINASALNVRSGEGTNYRII-GALPQGQKVQVISENSGWSKIN-YNGQTGYIGTRYLS 61
Score = 37.0 bits (86), Expect = 0.002
Identities = 7/55 (12%), Positives = 16/55 (29%)
Query: 128 RKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQ 182
N +N+ I+ + G + + + W G+I +
Sbjct: 4 DYYINASALNVRSGEGTNYRIIGALPQGQKVQVISENSGWSKINYNGQTGYIGTR 58
>3h41_A NLP/P60 family protein; NP_979181.1, NLPC/P60 family
protein, structural genomics, joint center for
structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus
cereus atcc 10987} (A:108-184)
Length = 77
Score = 43.6 bits (103), Expect = 2e-05
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 57 FVTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLS 116
FV + A I P + + ++ + ++ E ++ +G W+ K+ +
Sbjct: 12 FVLVTKPTAILYINPSEKHKSL--EVSYNTRLPLLSEDTISYRVLLPNGQKAWLRKNDGT 69
Query: 117 GKRS 120
RS
Sbjct: 70 FYRS 73
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains,
signaling protein; 2.65A {Listeria monocytogenes}
(A:435-519)
Length = 85
Score = 26.7 bits (59), Expect = 2.1
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 89 EVVKEYENWRQIRDFDGTIGWINKSLLS 116
E W Q IGW++ L+
Sbjct: 52 EAKTPITTWYQFSIGGKVIGWVDTRALN 79
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} (A:)
Length = 74
Score = 25.9 bits (57), Expect = 3.8
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 152 VEPGVLLTIRECSGEWCFGYNLDTEGWI 179
++T+ E W FG GW
Sbjct: 29 FSKHDIITVLEQQENWWFGEVHGGRGWF 56
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} (A:)
Length = 69
Score = 25.9 bits (57), Expect = 4.4
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 152 VEPGVLLTIRECSGEWCFGYNLDTEGWI 179
G + + + GEW G D G
Sbjct: 27 FTEGEEILVTQKDGEWWTGSIGDRSGIF 54
>1h76_A Serotransferrin; iron transport, glycoprotein,
metal-binding; HET: NAG; 2.15A {Sus scrofa} (A:424-593)
Length = 170
Score = 25.5 bits (55), Expect = 4.8
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 141 KPDIQSIIVAKVEPGVLLTIRECSGE-WCFGYNLDTEGWI 179
+ ++ V K G L G+ C T GW
Sbjct: 5 EKGYLAVAVVKKSSGPDLNWNNLKGKKSCHTAVDRTAGWN 44
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.140 0.441
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,555,053
Number of extensions: 68591
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 14
Length of query: 194
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 110
Effective length of database: 2,116,429
Effective search space: 232807190
Effective search space used: 232807190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)