RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780764|ref|YP_003065177.1| hypothetical protein CLIBASIA_03275 [Candidatus Liberibacter asiaticus str. psy62] (194 letters) >2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} (A:) Length = 76 Score = 56.4 bits (136), Expect = 3e-09 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 58 VTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLSG 117 + +S N R G V+ L+ V +V E + +I + G+ G++ K + Sbjct: 6 IVNVSSSLNVREGASTSSKVI-GSLSGNTKVTIVGEEGAFYKIE-YKGSHGYVAKEYIKD 63 Query: 118 KRSAIVSPWN 127 + ++ + Sbjct: 64 IKDEVLEHHH 73 Score = 38.7 bits (90), Expect = 6e-04 Identities = 10/65 (15%), Positives = 23/65 (35%) Query: 128 RKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQKIWGI 187 N +N+ + S ++ + +TI G + + G++ K+ I I Sbjct: 5 GIVNVSSSLNVREGASTSSKVIGSLSGNTKVTIVGEEGAFYKIEYKGSHGYVAKEYIKDI 64 Query: 188 YPGEV 192 + Sbjct: 65 KDEVL 69 >2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens} (A:) Length = 74 Score = 54.8 bits (132), Expect = 8e-09 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Query: 54 LPRFVTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKS 113 + V S N R GPG Y V+ L VE++KE + W +IR F+G +G+ +KS Sbjct: 1 MQGVVK-VNSALNMRSGPGSNYGVI-GTLRNNDKVEIIKEVDGWYEIR-FNGKVGYASKS 57 Query: 114 LLSGKRSAIVSPWN 127 ++ + + Sbjct: 58 YITIVNEGSLEHHH 71 Score = 37.9 bits (88), Expect = 0.001 Identities = 8/65 (12%), Positives = 18/65 (27%) Query: 128 RKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQKIWGI 187 +N+ P ++ + + I + W G+ K I + Sbjct: 3 GVVKVNSALNMRSGPGSNYGVIGTLRNNDKVEIIKEVDGWYEIRFNGKVGYASKSYITIV 62 Query: 188 YPGEV 192 G + Sbjct: 63 NEGSL 67 >2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian} (A:) Length = 70 Score = 50.9 bits (122), Expect = 1e-07 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 58 VTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLS 116 I AS N R G G Y ++ L +G V+V+ E W +I ++G G+I LS Sbjct: 5 YYINASALNVRSGEGTNYRII-GALPQGQKVQVISENSGWSKIN-YNGQTGYIGTRYLS 61 Score = 37.0 bits (86), Expect = 0.002 Identities = 7/55 (12%), Positives = 16/55 (29%) Query: 128 RKTNNPIYINLYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFGYNLDTEGWIKKQ 182 N +N+ I+ + G + + + W G+I + Sbjct: 4 DYYINASALNVRSGEGTNYRIIGALPQGQKVQVISENSGWSKINYNGQTGYIGTR 58 >3h41_A NLP/P60 family protein; NP_979181.1, NLPC/P60 family protein, structural genomics, joint center for structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987} (A:108-184) Length = 77 Score = 43.6 bits (103), Expect = 2e-05 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 57 FVTIKASRANSRIGPGIMYTVVCTYLTKGLPVEVVKEYENWRQIRDFDGTIGWINKSLLS 116 FV + A I P + + ++ + ++ E ++ +G W+ K+ + Sbjct: 12 FVLVTKPTAILYINPSEKHKSL--EVSYNTRLPLLSEDTISYRVLLPNGQKAWLRKNDGT 69 Query: 117 GKRS 120 RS Sbjct: 70 FYRS 73 >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} (A:435-519) Length = 85 Score = 26.7 bits (59), Expect = 2.1 Identities = 7/28 (25%), Positives = 10/28 (35%) Query: 89 EVVKEYENWRQIRDFDGTIGWINKSLLS 116 E W Q IGW++ L+ Sbjct: 52 EAKTPITTWYQFSIGGKVIGWVDTRALN 79 >1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} (A:) Length = 74 Score = 25.9 bits (57), Expect = 3.8 Identities = 7/28 (25%), Positives = 10/28 (35%) Query: 152 VEPGVLLTIRECSGEWCFGYNLDTEGWI 179 ++T+ E W FG GW Sbjct: 29 FSKHDIITVLEQQENWWFGEVHGGRGWF 56 >1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} (A:) Length = 69 Score = 25.9 bits (57), Expect = 4.4 Identities = 7/28 (25%), Positives = 10/28 (35%) Query: 152 VEPGVLLTIRECSGEWCFGYNLDTEGWI 179 G + + + GEW G D G Sbjct: 27 FTEGEEILVTQKDGEWWTGSIGDRSGIF 54 >1h76_A Serotransferrin; iron transport, glycoprotein, metal-binding; HET: NAG; 2.15A {Sus scrofa} (A:424-593) Length = 170 Score = 25.5 bits (55), Expect = 4.8 Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 1/40 (2%) Query: 141 KPDIQSIIVAKVEPGVLLTIRECSGE-WCFGYNLDTEGWI 179 + ++ V K G L G+ C T GW Sbjct: 5 EKGYLAVAVVKKSSGPDLNWNNLKGKKSCHTAVDRTAGWN 44 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.140 0.441 Gapped Lambda K H 0.267 0.0668 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,555,053 Number of extensions: 68591 Number of successful extensions: 196 Number of sequences better than 10.0: 1 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 14 Length of query: 194 Length of database: 4,956,049 Length adjustment: 84 Effective length of query: 110 Effective length of database: 2,116,429 Effective search space: 232807190 Effective search space used: 232807190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (23.9 bits)