RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780764|ref|YP_003065177.1| hypothetical protein
CLIBASIA_03275 [Candidatus Liberibacter asiaticus str. psy62]
         (194 letters)



>d1m9sa3 b.34.11.1 (A:466-551) Internalin B, C-terminal domains
           {Listeria monocytogenes [TaxId: 1639]}
          Length = 86

 Score = 29.4 bits (66), Expect = 0.20
 Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 47  EIFEKKPLPRFVTIKASRANSRIGPGIMYTVVCTYLT-----KGLPVEVVKEYEN----W 97
           ++   K +  +  ++ +  NS +      T    ++      +G  + +++E +     W
Sbjct: 4   KMEYDKGVTAYARVRNASGNS-VWTKPYNTAGAKHVNKLSVYQGKNMRILREAKTPITTW 62

Query: 98  RQIRDFDGTIGWINKSLLS 116
            Q       IGW++   L+
Sbjct: 63  YQFSIGGKVIGWVDTRALN 81


>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 74

 Score = 26.3 bits (58), Expect = 1.9
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 152 VEPGVLLTIRECSGEWCFGYNLDTEGWI 179
                ++T+ E    W FG      GW 
Sbjct: 29  FSKHDIITVLEQQENWWFGEVHGGRGWF 56


>d1m9sa4 b.34.11.1 (A:552-629) Internalin B, C-terminal domains
           {Listeria monocytogenes [TaxId: 1639]}
          Length = 78

 Score = 25.9 bits (57), Expect = 2.3
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 89  EVVKEYENWRQIRDFDGTIGWINKSLLSGK 118
           +   E + W +IR     IGW   + L  +
Sbjct: 49  QATIEGQLWYRIRTSSTFIGWTKAANLRAQ 78


>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 69

 Score = 25.5 bits (56), Expect = 3.2
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 152 VEPGVLLTIRECSGEWCFGYNLDTEGWI 179
              G  + + +  GEW  G   D  G  
Sbjct: 27  FTEGEEILVTQKDGEWWTGSIGDRSGIF 54


>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 59

 Score = 24.1 bits (52), Expect = 7.2
 Identities = 6/29 (20%), Positives = 16/29 (55%)

Query: 82  LTKGLPVEVVKEYENWRQIRDFDGTIGWI 110
           + K   +E++ +   W ++R+  G  G++
Sbjct: 20  VMKDDVLEILDDRRQWWKVRNASGDSGFV 48


>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human
           (Homo sapiens), p58-cl42 kir [TaxId: 9606]}
          Length = 99

 Score = 23.9 bits (51), Expect = 9.0
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 138 LYKKPDIQSIIVAKVEPGVLLTIRECSGEWCFG-YNLDTEG 177
           LY+KP + +     V  G  +T+  CS    +  Y+L  EG
Sbjct: 3   LYEKPSLSAQPGPTVLAGENVTLS-CSSRSSYDMYHLSREG 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0702    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 780,600
Number of extensions: 35968
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 8
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.1 bits)