HHsearch alignment for GI: 254780765 and conserved domain: COG1083
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane].
Probab=99.97 E-value=7.1e-30 Score=206.75 Aligned_cols=213 Identities=21% Similarity=0.211 Sum_probs=156.9
Q ss_pred CCCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCC-CCCH
Q ss_conf 565699981776788898850000067226689999999679-98699986833000100012222222222345-6520
Q gi|254780765|r 7 KEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQ-SGSD 84 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~-~GTd 84 (268)
T Consensus 1 ~~~~iAiIpAR~gSKgI~~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~Il~~A~~ygak~~~~Rp~~LA~D~a 80 (228)
T COG1083 1 MMKNIAIIPARGGSKGIKNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEEAKKYGAKVFLKRPKELASDRA 80 (228)
T ss_pred CCCEEEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCH
T ss_conf 96148997626788768763357757961589999998658852269984795899999987276110248745416721
Q ss_pred ----HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCH---HHCCCCCCCEEEEECC
Q ss_conf ----489999742233452100001522101000001223332101344321111112201---1003754431465145
Q gi|254780765|r 85 ----RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGS---TDPDDPNIVKIVVASP 157 (268)
Q Consensus 85 ----Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~---~~~~d~n~vKvi~~~~ 157 (268)
T Consensus 81 st~~~~lh~le~~--~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~~p~k~f~~~~~~~~~~~~~- 157 (228)
T COG1083 81 STIDAALHALESF--NIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEHHPYKAFSLNNGEVKPVNED- 157 (228)
T ss_pred HHHHHHHHHHHHH--CCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCCCEEECCCC-
T ss_conf 6789999999874--4245706884068500014579999999965887635887532234688887507844101147-
Q ss_pred CCCCCHHHHHCC-CCCCCCCCCCCCCCEE-EEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEE-CCCCCC
Q ss_conf 444200111103-5777531112235201-3552002333332079982111208447989978962669984-588887
Q gi|254780765|r 158 SENGCFRALYFT-RTKTPHGTGPFYQHLG-IYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIV-QSNAMS 234 (268)
Q Consensus 158 ~~~~~~~alyfs-R~~ip~~~~~~~~hvG-Iy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~-~~~~~~ 234 (268)
T Consensus 158 -------~~~~~rrQ~Lp----k~Y~~NgaiYi~~~~~l~e~~---------------~~f~---~~~~~y~m~~~~~~D 208 (228)
T COG1083 158 -------PDFETRRQDLP----KAYRENGAIYINKKDALLEND---------------CFFI---PNTILYEMPEDESID 208 (228)
T ss_pred -------CCCCCCCCCCH----HHHHHCCCEEEEHHHHHHHCC---------------CEEC---CCCEEEECCCCCCCC
T ss_conf -------76554211051----656536767975279874157---------------5415---896689817120005
Q ss_pred CCCHHHHHHHHHHHHCC
Q ss_conf 68999999999997307
Q gi|254780765|r 235 VDTTNDLEKVRTLIPHD 251 (268)
Q Consensus 235 IDt~~Dl~~v~~il~~~ 251 (268)
T Consensus 209 ID~~~Dl~iae~l~~~~ 225 (228)
T COG1083 209 IDTELDLEIAENLIFLK 225 (228)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 66087699999986564