HHsearch alignment for GI: 254780765 and conserved domain: COG1211

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism].
Probab=99.35  E-value=1.6e-11  Score=92.20  Aligned_cols=214  Identities=19%  Similarity=0.218  Sum_probs=131.9

Q ss_pred             CCCCEEEEEECCCCCCCC----CCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCC---CCHHHHCC---CCCCCCCC
Q ss_conf             556569998177678889----8850000067226689999999679-9869998683---30001000---12222222
Q gi|254780765|r    6 IKEKVLVIIPARLNSMRF----PKKILADINGLPMILHTAIRARKAN-IGRVIVAVDD---TKINEIVL---QAGFESVM   74 (268)
Q Consensus         6 ~~~ki~~iIpAR~~S~Rl----p~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd---~~I~~~~~---~~g~~~i~   74 (268)
T Consensus         1 ~~~~~~~vilAaG~G~R~~~~~p-Kq~l~l~g~pll~~tl~~f~~~~~i~~ivvv~~~~~~~~~~~~~~~~~~~~v~~v-   78 (230)
T COG1211           1 MRMMVSAVILAAGFGSRMGNPVP-KQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVEVV-   78 (230)
T ss_pred             CCCEEEEEEECCCCCCCCCCCCC-CEEEEECCEEEHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEE-
T ss_conf             97407999975763433579998-4588999988569999999747676769999784664899986321248707993-


Q ss_pred             CCCCCCCCCHHHHHHHHHHCCC--CCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEE
Q ss_conf             2223456520489999742233--45210000152210100000122333210134432111111220110037544314
Q gi|254780765|r   75 THTSHQSGSDRIFEALNIIDSD--KKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKI  152 (268)
Q Consensus        75 t~~~~~~GTdRi~ea~~~l~~~--~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKv  152 (268)
T Consensus        79 -----~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~--~~~~aai~alpv~DTi--------k~  143 (230)
T COG1211          79 -----KGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELA--DKYGAAILALPVTDTL--------KR  143 (230)
T ss_pred             -----CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHH--CCCCCEEEEEECCCCE--------EE
T ss_conf             -----48751799999999972115898899964666789999999999862--2388179975046737--------88


Q ss_pred             EEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHH-HCCCEEEEEEECCC
Q ss_conf             65145444200111103577753111223520135520023333320799821112084479899-78962669984588
Q gi|254780765|r  153 VVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRAL-EARMRIDVKIVQSN  231 (268)
Q Consensus       153 i~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~l-eng~~I~~~~~~~~  231 (268)
T Consensus       144 ~~-~~~----~i~~t~~R-------~~l~~~QTPQ~F~~~~L~~a~~~a--~~~~~~~tDdas~~e~~G~~v~lV~G~~~  209 (230)
T COG1211         144 VD-ADG----NIVETVDR-------SGLWAAQTPQAFRLELLKQALARA--FAEGREITDDASAIEKAGGPVSLVEGSAD  209 (230)
T ss_pred             EC-CCC----CEEECCCH-------HHHHHHHCCCCCCHHHHHHHHHHH--HHCCCCCCCHHHHHHHCCCCEEEEECCCC
T ss_conf             65-898----72344375-------542343387633199999999999--86287768869999876998199826833


Q ss_pred             CCCCCCHHHHHHHHHHHHC
Q ss_conf             8876899999999999730
Q gi|254780765|r  232 AMSVDTTNDLEKVRTLIPH  250 (268)
Q Consensus       232 ~~~IDt~~Dl~~v~~il~~  250 (268)
T Consensus       210 n~KiTtpeDL~~a~~il~~  228 (230)
T COG1211         210 NFKITTPEDLEIAEAILRR  228 (230)
T ss_pred             EEEECCHHHHHHHHHHHCC
T ss_conf             0576288899999987526