HHsearch alignment for GI: 254780765 and conserved domain: COG1861
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane].
Probab=99.96 E-value=6.2e-30 Score=207.13 Aligned_cols=196 Identities=24% Similarity=0.351 Sum_probs=137.2
Q ss_pred CCCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCC----CHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 565699981776788898850000067226689999999679-98699986833----0001000122222222223456
Q gi|254780765|r 7 KEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDT----KINEIVLQAGFESVMTHTSHQS 81 (268)
Q Consensus 7 ~~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~----~I~~~~~~~g~~~i~t~~~~~~ 81 (268)
T Consensus 1 ~~~I~~IiQARmgStRLpgKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~vf-------r 73 (241)
T COG1861 1 MSMILVIIQARMGSTRLPGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGFYVF-------R 73 (241)
T ss_pred CCCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCEEEE-------C
T ss_conf 984798853002676578613333078741999999986043324358973477204579999997082476-------3
Q ss_pred CC-----HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEEC
Q ss_conf 52-----0489999742233452100001522101000001223332101344321111112201100375443146514
Q gi|254780765|r 82 GS-----DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVAS 156 (268)
Q Consensus 82 GT-----dRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~ 156 (268)
T Consensus 74 Gs~~dVL~Rf~~a~~a~----~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~s~~~~---p~G~----~vEV~~-- 140 (241)
T COG1861 74 GSEEDVLQRFIIAIKAY----SADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYVSNTGA---PLGT----DVEVMK-- 140 (241)
T ss_pred CCHHHHHHHHHHHHHHC----CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC---CCCC----CEEEEE--
T ss_conf 88899999999999735----8876999608998778899999999998659860136687---6655----315543--
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf 54442001111035777531112235201355200233333207998211120844798997896266998458888768
Q gi|254780765|r 157 PSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVD 236 (268)
Q Consensus 157 ~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~ID 236 (268)
T Consensus 141 ------a~~L~--~a~k~~~e~~~rEhvT~yi~n~P~~fk-----~~~l~~p~~~---------------~~~~~RltvD 192 (241)
T COG1861 141 ------ARALK--KAAKEALEAYYREHVTPYIRNNPERFK-----VAYLEAPEAW---------------KRPDYRLTVD 192 (241)
T ss_pred ------HHHHH--HHHHHCCCHHHHHCCCHHHHHCCCEEE-----EEEECCHHHC---------------CCCCEEEEEC
T ss_conf ------57899--867642344666416899870976078-----9765473222---------------6876478846
Q ss_pred CHHHHHHHHHHHHC
Q ss_conf 99999999999730
Q gi|254780765|r 237 TTNDLEKVRTLIPH 250 (268)
Q Consensus 237 t~~Dl~~v~~il~~ 250 (268)
T Consensus 193 t~eD~~~~~~vye~ 206 (241)
T COG1861 193 TQEDFALAKAVYEY 206 (241)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 39999999999997