HHsearch alignment for GI: 254780765 and conserved domain: PRK09382
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional.
Probab=99.46 E-value=2.4e-12 Score=97.36 Aligned_cols=205 Identities=19% Similarity=0.224 Sum_probs=130.6
Q ss_pred CCCCCEEEEEECCCCCCCCCC-----CEECCCCCCCHHHHHHHHHHHC-CCCEEEEECCCCCHHHHCCCC--CCCCCCCC
Q ss_conf 555656999817767888988-----5000006722668999999967-998699986833000100012--22222222
Q gi|254780765|r 5 HIKEKVLVIIPARLNSMRFPK-----KILADINGLPMILHTAIRARKA-NIGRVIVAVDDTKINEIVLQA--GFESVMTH 76 (268)
Q Consensus 5 ~~~~ki~~iIpAR~~S~Rlp~-----K~L~~i~gkplI~~v~~~a~~s-~~~~viVaTdd~~I~~~~~~~--g~~~i~t~ 76 (268)
T Consensus 2 ~~M~~i~aIIlAAG~G~Rfg~~~~ipKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvvv~~~~~-~~~~~~~~~i~~V--- 77 (382)
T PRK09382 2 TVMSDISLVIVAAGRSTRFGQSAEVKKQWLRIGGKPLWLHVLENFSSAPDFKEIVVVIHPDDI-AYMKRAVPEIKFV--- 77 (382)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHH-HHHHHHCCCCEEE---
T ss_conf 745763799968722504899879997410679778999999999668998989999388899-9999745795793---
Q ss_pred CCCCCCCHH---HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEE
Q ss_conf 234565204---89999742233452100001522101000001223332101344321111112201100375443146
Q gi|254780765|r 77 TSHQSGSDR---IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIV 153 (268)
Q Consensus 77 ~~~~~GTdR---i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi 153 (268)
T Consensus 78 ---~GG~tRq~SV~ngL~~i~----~~~VlIHDaARP~vs~~lI~~li~~~~~~--~a~ip~lpv~DT--------ik~~ 140 (382)
T PRK09382 78 ---TGGATRQESVRNALEALD----SEYVLISDAARPFVPKELIDRLIEALDKA--DCVLPALPVADT--------LKRA 140 (382)
T ss_pred ---CCCHHHHHHHHHHHHHCC----CCEEEEECCCCCCCCHHHHHHHHHHHCCC--CCCEEEEECCCC--------EEEC
T ss_conf ---785059999999997567----88899955425789999999999865147--761587524335--------0104
Q ss_pred EECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHH-CCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 514544420011110357775311122352013552002333332-0799821112084479899789626699845888
Q gi|254780765|r 154 VASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFT-QLSPSVLEQRESLEQLRALEARMRIDVKIVQSNA 232 (268)
Q Consensus 154 ~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~-~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~ 232 (268)
T Consensus 141 ~----~tvdR~~l--~~~QTP------------Q~F~~~~L~~a~~~a~~~~~~~TDDasl--~e~~G~~V~~V~G~~~N 200 (382)
T PRK09382 141 N----ETVDREGL--KLIQTP------------QLSRTKTLLAAHRKALSGRTDFTDDSSI--AEAAGGKVALVEGSEDL 200 (382)
T ss_pred C----CCCCHHHC--EEECCC------------CCCCHHHHHHHHHHHHHCCCCCCCHHHH--HHHCCCCEEEEECCCCC
T ss_conf 6----64686784--562277------------5355999999999998639986740999--99869927999567548
Q ss_pred CCCCCHHHHHHHHHHHHC
Q ss_conf 876899999999999730
Q gi|254780765|r 233 MSVDTTNDLEKVRTLIPH 250 (268)
Q Consensus 233 ~~IDt~~Dl~~v~~il~~ 250 (268)
T Consensus 201 ~KITtpeDL~~~~~~~~~ 218 (382)
T PRK09382 201 HKLTFKEDLKALDRLSAP 218 (382)
T ss_pred CCCCCHHHHHHHHHHHCC
T ss_conf 538999999999864444