HHsearch alignment for GI: 254780765 and conserved domain: PRK09382

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional.
Probab=99.46  E-value=2.4e-12  Score=97.36  Aligned_cols=205  Identities=19%  Similarity=0.224  Sum_probs=130.6

Q ss_pred             CCCCCEEEEEECCCCCCCCCC-----CEECCCCCCCHHHHHHHHHHHC-CCCEEEEECCCCCHHHHCCCC--CCCCCCCC
Q ss_conf             555656999817767888988-----5000006722668999999967-998699986833000100012--22222222
Q gi|254780765|r    5 HIKEKVLVIIPARLNSMRFPK-----KILADINGLPMILHTAIRARKA-NIGRVIVAVDDTKINEIVLQA--GFESVMTH   76 (268)
Q Consensus         5 ~~~~ki~~iIpAR~~S~Rlp~-----K~L~~i~gkplI~~v~~~a~~s-~~~~viVaTdd~~I~~~~~~~--g~~~i~t~   76 (268)
T Consensus         2 ~~M~~i~aIIlAAG~G~Rfg~~~~ipKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvvv~~~~~-~~~~~~~~~i~~V---   77 (382)
T PRK09382          2 TVMSDISLVIVAAGRSTRFGQSAEVKKQWLRIGGKPLWLHVLENFSSAPDFKEIVVVIHPDDI-AYMKRAVPEIKFV---   77 (382)
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHH-HHHHHHCCCCEEE---
T ss_conf             745763799968722504899879997410679778999999999668998989999388899-9999745795793---


Q ss_pred             CCCCCCCHH---HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEE
Q ss_conf             234565204---89999742233452100001522101000001223332101344321111112201100375443146
Q gi|254780765|r   77 TSHQSGSDR---IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIV  153 (268)
Q Consensus        77 ~~~~~GTdR---i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi  153 (268)
T Consensus        78 ---~GG~tRq~SV~ngL~~i~----~~~VlIHDaARP~vs~~lI~~li~~~~~~--~a~ip~lpv~DT--------ik~~  140 (382)
T PRK09382         78 ---TGGATRQESVRNALEALD----SEYVLISDAARPFVPKELIDRLIEALDKA--DCVLPALPVADT--------LKRA  140 (382)
T ss_pred             ---CCCHHHHHHHHHHHHHCC----CCEEEEECCCCCCCCHHHHHHHHHHHCCC--CCCEEEEECCCC--------EEEC
T ss_conf             ---785059999999997567----88899955425789999999999865147--761587524335--------0104


Q ss_pred             EECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHH-CCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             514544420011110357775311122352013552002333332-0799821112084479899789626699845888
Q gi|254780765|r  154 VASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFT-QLSPSVLEQRESLEQLRALEARMRIDVKIVQSNA  232 (268)
Q Consensus       154 ~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~-~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~  232 (268)
T Consensus       141 ~----~tvdR~~l--~~~QTP------------Q~F~~~~L~~a~~~a~~~~~~~TDDasl--~e~~G~~V~~V~G~~~N  200 (382)
T PRK09382        141 N----ETVDREGL--KLIQTP------------QLSRTKTLLAAHRKALSGRTDFTDDSSI--AEAAGGKVALVEGSEDL  200 (382)
T ss_pred             C----CCCCHHHC--EEECCC------------CCCCHHHHHHHHHHHHHCCCCCCCHHHH--HHHCCCCEEEEECCCCC
T ss_conf             6----64686784--562277------------5355999999999998639986740999--99869927999567548


Q ss_pred             CCCCCHHHHHHHHHHHHC
Q ss_conf             876899999999999730
Q gi|254780765|r  233 MSVDTTNDLEKVRTLIPH  250 (268)
Q Consensus       233 ~~IDt~~Dl~~v~~il~~  250 (268)
T Consensus       201 ~KITtpeDL~~~~~~~~~  218 (382)
T PRK09382        201 HKLTFKEDLKALDRLSAP  218 (382)
T ss_pred             CCCCCHHHHHHHHHHHCC
T ss_conf             538999999999864444