HHsearch alignment for GI: 254780765 and conserved domain: TIGR00466
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase; InterPro: IPR004528 3-Deoxy-D-manno-octulosonate cytidylyltransferase (2.7.7.38 from EC) activates KDO, a required 8-carbon sugar, for incorporation into bacterial lipopolysaccharide in Gram negative bacteria. It acts as a homodimer and catalyses the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate and pyrophosphate.; GO: 0008690 3-deoxy-manno-octulosonate cytidylyltransferase activity, 0009103 lipopolysaccharide biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=435.20 Aligned_cols=228 Identities=41% Similarity=0.629 Sum_probs=216.4
Q ss_pred CEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 56999817767888988500000672266899999996799869998683300010001222222222234565204899
Q gi|254780765|r 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSGSDRIFE 88 (268)
Q Consensus 9 ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~GTdRi~e 88 (268)
T Consensus 2 sF~vIIPAR~~SsRl~~K~L~DI~G~PMi~~v~~~A~~s~~~~~ivA~D~E~v~~~~~~~~~~~~~T~~~H~SGTERl~E 81 (246)
T TIGR00466 2 SFVVIIPARLASSRLPGKPLEDIKGKPMIVHVLEKANESGADRVIVATDDESVAQTVKKFGIEVCLTSKDHNSGTERLAE 81 (246)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
T ss_conf 05898536531135898720355789368899999752363568997487269999997297189851667850468999
Q ss_pred HHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHC
Q ss_conf 99742233452100001522101000001223332101344321111112201100375443146514544420011110
Q gi|254780765|r 89 ALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYF 168 (268)
Q Consensus 89 a~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyf 168 (268)
T Consensus 82 ~~~~la~~-~d~~i~N~QGDEP~~~~~ii~~~~~nLA~~~~~~~~~a~ki~d~E~~~~PN~VKVvlD~~~-----~~LYF 155 (246)
T TIGR00466 82 VVEKLALK-DDEVIVNLQGDEPLIPKEIIRQVADNLAKKNVPMAALAVKIHDAEEAFNPNAVKVVLDSEG-----YALYF 155 (246)
T ss_pred HHHHHCCC-CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC-----CEEEE
T ss_conf 99984789-8857998208987653899999999886304011211222221212059974799970788-----67886
Q ss_pred CCCCCCCCCC---------------CCCCCEEEEEEE-HHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECCC-
Q ss_conf 3577753111---------------223520135520-02333332079982111208447989978962669984588-
Q gi|254780765|r 169 TRTKTPHGTG---------------PFYQHLGIYAYR-REALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSN- 231 (268)
Q Consensus 169 sR~~ip~~~~---------------~~~~hvGIy~f~-~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~- 231 (268)
T Consensus 156 SRs~IP~~RD~~~~~~~~~~~~~~D~~L~HiGIYgy~n~~~~~~~v~~~P~~LE~iE~LEQLR~Lyy~~kI~V~~~~~~P 235 (246)
T TIGR00466 156 SRSLIPFDRDRFAKRQEVQKVQLSDALLRHIGIYGYRNAGFIKEYVAWKPSVLEEIEKLEQLRVLYYGEKIHVKIAQEVP 235 (246)
T ss_pred ECCCCCCCHHHHHHHCCCCEEEHHHHHHHHHCHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 40215420012443055100201134454422111002479999972288740245667888887605636898750378
Q ss_pred CCCCCCHHHHH
Q ss_conf 88768999999
Q gi|254780765|r 232 AMSVDTTNDLE 242 (268)
Q Consensus 232 ~~~IDt~~Dl~ 242 (268)
T Consensus 236 ~vGvDT~EDL~ 246 (246)
T TIGR00466 236 SVGVDTQEDLE 246 (246)
T ss_pred CCCCCCHHHCC
T ss_conf 86778623149