HHsearch alignment for GI: 254780765 and conserved domain: TIGR01207
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase; InterPro: IPR005907 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. The enzyme is active as a homotetramer. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005908 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. ; GO: 0008879 glucose-1-phosphate thymidylyltransferase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=96.60 E-value=0.029 Score=34.39 Aligned_cols=222 Identities=17% Similarity=0.125 Sum_probs=121.2
Q ss_pred EEEECCCCCCCC-C-----CCEECCCCCCCHHHHHHHHHHHCCCCEEEEEC-CCC-----CHHHHCCCCCCCCCCCCCCC
Q ss_conf 998177678889-8-----85000006722668999999967998699986-833-----00010001222222222234
Q gi|254780765|r 12 VIIPARLNSMRF-P-----KKILADINGLPMILHTAIRARKANIGRVIVAV-DDT-----KINEIVLQAGFESVMTHTSH 79 (268)
Q Consensus 12 ~iIpAR~~S~Rl-p-----~K~L~~i~gkplI~~v~~~a~~s~~~~viVaT-dd~-----~I~~~~~~~g~~~i~t~~~~ 79 (268)
T Consensus 2 Gi~laGG~Gtrl~P~t~~~skqllP~ydkPmiyyPl~~lmlaG~r~i~~i~~~~~~~~f~~llGdG~~~G~~~~y~~q~~ 81 (286)
T TIGR01207 2 GIILAGGSGTRLYPITLAVSKQLLPVYDKPMIYYPLSVLMLAGIRDILIISTPEDTPRFKRLLGDGSQFGVELSYAVQPS 81 (286)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCHHCEEEEEECCCC
T ss_conf 26872688740124345443210310157501231899987302220135211000578987135201045788711578
Q ss_pred CCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCC
Q ss_conf 56520489999742233452100001522101000001223332101344321111112201100375443146514544
Q gi|254780765|r 80 QSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSE 159 (268)
Q Consensus 80 ~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~ 159 (268)
T Consensus 82 P~G---la~af~ig~~f~~~~~~~l~lGdn~fyG~~~~~~l~~-~~~~~~Ga~vf~y~v~~P~~yG------v~-~f~-- 148 (286)
T TIGR01207 82 PDG---LAQAFIIGEEFIGDDKSALVLGDNIFYGHDLSELLKR-AAAREEGATVFAYQVKDPERYG------VV-EFD-- 148 (286)
T ss_pred CCH---HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHCCCEEEEEEECCCCCCC------EE-EEC--
T ss_conf 632---5888877688726776179960500102148999999-8753068579998750764123------06-663--
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHH-HHHCCC-EEEEEEECCCCCCCCC
Q ss_conf 42001111035777531112235201355200233333207998211120844798-997896-2669984588887689
Q gi|254780765|r 160 NGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLR-ALEARM-RIDVKIVQSNAMSVDT 237 (268)
Q Consensus 160 ~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR-~leng~-~I~~~~~~~~~~~IDt 237 (268)
T Consensus 149 -~~~~~~--~~eekP~~P~s~y~v~Gly~yd~~~~~~a~~~~~s~rGelei~~~n~~yl~~G~l~v~~~~rG~aWldtGt 225 (286)
T TIGR01207 149 -EEGRAI--SLEEKPAKPKSNYAVTGLYFYDNRVVEIARELKPSARGELEITDLNRVYLEEGKLSVELLGRGYAWLDTGT 225 (286)
T ss_pred -CCCCEE--EEECCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEHHHHCCCCEECCCH
T ss_conf -873178--64137888763413401110106899999731324566402888999998636502014526511000111
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999973
Q gi|254780765|r 238 TNDLEKVRTLIP 249 (268)
Q Consensus 238 ~~Dl~~v~~il~ 249 (268)
T Consensus 226 ~~sl~~a~~f~~ 237 (286)
T TIGR01207 226 HDSLLEASSFIE 237 (286)
T ss_pred HHHHHHHHHHHH
T ss_conf 688999999999