HHsearch alignment for GI: 254780765 and conserved domain: TIGR01208
>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=99.79 E-value=1.5e-18 Score=136.00 Aligned_cols=212 Identities=21% Similarity=0.280 Sum_probs=159.3
Q ss_pred EEEECCCCCCCC-C-----CCEECCCCCCCHHHHHHHHHHHCCCCEEEEECC---CCCHHHHCC---CCCCC--CCCCCC
Q ss_conf 998177678889-8-----850000067226689999999679986999868---330001000---12222--222222
Q gi|254780765|r 12 VIIPARLNSMRF-P-----KKILADINGLPMILHTAIRARKANIGRVIVAVD---DTKINEIVL---QAGFE--SVMTHT 77 (268)
Q Consensus 12 ~iIpAR~~S~Rl-p-----~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTd---d~~I~~~~~---~~g~~--~i~t~~ 77 (268)
T Consensus 2 aliL~aG~GTRLRPLTFt~pK~LiPvAnKPi~~Yaie~~~~AGI~diGIvvg~~~~e~i~~~~g~g~~fg~kityI~Q~~ 81 (361)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLIEAGITDIGIVVGPETGEEIKEIVGEGERFGAKITYIVQGE 81 (361)
T ss_pred CEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHEEEECCCCCCCEEEEEEECCC
T ss_conf 24425878676777665788430661687323676888874697699998469882122023248830232898982278
Q ss_pred CCCCCCHHHHHHHHHH-CC-CCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH-----CC--CCC
Q ss_conf 3456520489999742-23-345210000152210100000122333210134432111111220110-----03--754
Q gi|254780765|r 78 SHQSGSDRIFEALNII-DS-DKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTD-----PD--DPN 148 (268)
Q Consensus 78 ~~~~GTdRi~ea~~~l-~~-~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~-----~~--d~n 148 (268)
T Consensus 82 --plG---lAHAv~~A~~fGlgd~~FvvYL-GDNl~--~~gi~~fv~~F~~~~~da~ILL~~V~dP~~FGVA~l~d~G~~ 153 (361)
T TIGR01208 82 --PLG---LAHAVYVARDFGLGDEDFVVYL-GDNLI--QDGIKRFVKSFEEKDYDALILLKKVEDPTAFGVAELEDDGKR 153 (361)
T ss_pred --CCH---HHHHHHHHHHHCCCCCCEEEEC-CCCHH--HHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEECCCCE
T ss_conf --760---4676457888478998607973-74210--423789988533148003011043887884555899248979
Q ss_pred CCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEH--HHHHHHHCCCCC---CCHHHCCHHHHHHHHCCCEE
Q ss_conf 4314651454442001111035777531112235201355200--233333207998---21112084479899789626
Q gi|254780765|r 149 IVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRR--EALKRFTQLSPS---VLEQRESLEQLRALEARMRI 223 (268)
Q Consensus 149 ~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~--~~L~~~~~l~~t---~lE~~E~lEqLR~leng~~I 223 (268)
T Consensus 154 i~~Lv-EKPk~PP-----------------SNLAvvGlY~F~pPe~if~~~~~~kPSwRGElEITD~IQ~l--Ie~Gy~V 213 (361)
T TIGR01208 154 ILKLV-EKPKEPP-----------------SNLAVVGLYMFRPPELIFEAIKNIKPSWRGELEITDAIQYL--IEKGYKV 213 (361)
T ss_pred EEEEE-ECCCCCC-----------------CCCEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH--HHCCCEE
T ss_conf 99988-3386578-----------------77012334533877798889852888776621577577565--3158377
Q ss_pred EEEEECCCCCCCCC--HHHHHHHHHHHHCCHH
Q ss_conf 69984588887689--9999999999730724
Q gi|254780765|r 224 DVKIVQSNAMSVDT--TNDLEKVRTLIPHDHH 253 (268)
Q Consensus 224 ~~~~~~~~~~~IDt--~~Dl~~v~~il~~~~~ 253 (268)
T Consensus 214 ~~~~v~--GWWkDTGk~eDLL~AN~~iLd~~~ 243 (361)
T TIGR01208 214 GGSKVK--GWWKDTGKPEDLLDANRLILDEEV 243 (361)
T ss_pred EEEEEE--EEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 779997--887015980238999999744322