HHsearch alignment for GI: 254780765 and conserved domain: TIGR02623
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase; InterPro: IPR013446 Glucose-1-phosphate cytidylyltransferases, also known as CDP-glucose pyrophosphorylase, are the product of the rfbF gene and produce CDP-D-glucose..
Probab=97.44 E-value=0.01 Score=37.21 Aligned_cols=213 Identities=18% Similarity=0.172 Sum_probs=116.5
Q ss_pred EEEECCCCCCCC------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCC--CHHHHCCCCCCCC-----------
Q ss_conf 998177678889------885000006722668999999967998699986833--0001000122222-----------
Q gi|254780765|r 12 VIIPARLNSMRF------PKKILADINGLPMILHTAIRARKANIGRVIVAVDDT--KINEIVLQAGFES----------- 72 (268)
Q Consensus 12 ~iIpAR~~S~Rl------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~--~I~~~~~~~g~~~----------- 72 (268)
T Consensus 3 aViLAGGlGTRisEEt~lrPKPM~EiGgkPIlWHI~k~Y~~~Gi~~FiiC~GYkGy~IKeyF~NY~l~~SDvT~~l~~n~ 82 (256)
T TIGR02623 3 AVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSAHGIKEFIICLGYKGYVIKEYFANYFLHMSDVTIDLEDNT 82 (256)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCEEECCEEEEEECCCE
T ss_conf 79971786443224353589760776796377889999975283302788534332201001063231131678751570
Q ss_pred ---------------CCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCC
Q ss_conf ---------------2222234565204899997422334521000015221010000012233321013443-211111
Q gi|254780765|r 73 ---------------VMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVD-IGTLGT 136 (268)
Q Consensus 73 ---------------i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~d-v~tl~~ 136 (268)
T Consensus 83 ~~~H~~~~EPW~VTLvDTG~~t~TG-GRl~Rv~~~~~~d~~---Fc~TYGDG--v~~~~I~~~~~~H~~~g~~AT~tAv~ 156 (256)
T TIGR02623 83 IEVHEKRAEPWRVTLVDTGESTQTG-GRLKRVREYLEDDEA---FCLTYGDG--VADIDIKALIAFHRKHGKKATVTAVQ 156 (256)
T ss_pred EEECCCCCCCCEEEEEECCCCCCCC-CHHHHHHHHHCCCCC---EEEEECCC--CCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 4531213897168888568776678-327889998437876---89871585--03325899999988629806788607
Q ss_pred CCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHH
Q ss_conf 12201100375443146514544420011110357775311122352013552002333332079982111208447989
Q gi|254780765|r 137 RIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRA 216 (268)
Q Consensus 137 ~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~ 216 (268)
T Consensus 157 PPG---RfGa-----L~~~~~------~V~~F~E--KP~gd~g~i-NGGFFVL~P~V~d~-I~~D~~~wE~-~~L~~L-- 215 (256)
T TIGR02623 157 PPG---RFGA-----LELEGE------SVTSFQE--KPLGDGGLI-NGGFFVLNPSVLDL-IDGDATVWES-EPLETL-- 215 (256)
T ss_pred CCC---CEEE-----EEECCC------CEEEECC--CCCCCCEEE-ECCEEEECCCEEEE-ECCCCEEECC-HHHHHH--
T ss_conf 888---3023-----677255------1111014--748898168-06568748320202-2488502010-378999--
Q ss_pred HHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCH
Q ss_conf 978962669984588887689999999999973072
Q gi|254780765|r 217 LEARMRIDVKIVQSNAMSVDTTNDLEKVRTLIPHDH 252 (268)
Q Consensus 217 leng~~I~~~~~~~~~~~IDt~~Dl~~v~~il~~~~ 252 (268)
T Consensus 216 -~~~g~L~aY~H~GFW~PMDTLRDk~~L~~LW~~~~ 250 (256)
T TIGR02623 216 -AQRGELSAYEHSGFWQPMDTLRDKNKLEELWESNR 250 (256)
T ss_pred -HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf -74488137851775685222566799998875378