HHsearch alignment for GI: 254780765 and conserved domain: cd02513

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=100.00  E-value=9.5e-36  Score=243.41  Aligned_cols=211  Identities=26%  Similarity=0.307  Sum_probs=157.5

Q ss_pred             CEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCC-----
Q ss_conf             5699981776788898850000067226689999999679-9869998683300010001222222222234565-----
Q gi|254780765|r    9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQAGFESVMTHTSHQSG-----   82 (268)
Q Consensus         9 ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~I~~~~~~~g~~~i~t~~~~~~G-----   82 (268)
T Consensus         1 Ki~aiIpAR~gSkri~~KN~~~i~gkpLi~~~i~~a~ks~~~d~IivSTDs~~i~~~~~k~~~~~~~~Rpk~ls~d~~~~   80 (223)
T cd02513           1 KILAIIPARGGSKGIPGKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEEIAEVARKYGAEVPFLRPAELATDTASS   80 (223)
T ss_pred             CEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCEEEECCCHHHCCCCCCC
T ss_conf             98999867877878997004463895969999999996699550789558789754212456417973846876886780


Q ss_pred             CHHHHHHHHHHCC-CCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCC---CCCCCEEEEECCC
Q ss_conf             2048999974223-34521000015221010000012233321013443211111122011003---7544314651454
Q gi|254780765|r   83 SDRIFEALNIIDS-DKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPD---DPNIVKIVVASPS  158 (268)
Q Consensus        83 TdRi~ea~~~l~~-~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~---d~n~vKvi~~~~~  158 (268)
T Consensus        81 ~dvi~~~l~~~~~~~~~~d~iv~l~pTsP~r~~~~I~~~i~~~~~~k~dsl~sv~~~~~~~~~~~~~~~~~~~~-~~~~-  158 (223)
T cd02513          81 IDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDDNGLEP-VNYP-  158 (223)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHEEECCCCCCC-CCCC-
T ss_conf             67777899889986899899999627976278999999999998579999999985476818856762687021-3686-


Q ss_pred             CCCCHHHHHCCCCCCCCCCCCCCCCE-EEEEEEHHHHHHHHCCCCCCCHHHCCHHHHHHHHCCCEEEEEEECC-CCCCCC
Q ss_conf             44200111103577753111223520-1355200233333207998211120844798997896266998458-888768
Q gi|254780765|r  159 ENGCFRALYFTRTKTPHGTGPFYQHL-GIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQS-NAMSVD  236 (268)
Q Consensus       159 ~~~~~~alyfsR~~ip~~~~~~~~hv-GIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR~leng~~I~~~~~~~-~~~~ID  236 (268)
T Consensus       159 -----~~~~~~rQ~----~~~~y~~~g~~yi~~~~~~~k~~~~------------------~~~k~~~~~~~~~~siDID  211 (223)
T cd02513         159 -----EDKRTRRQD----LPPAYHENGAIYIAKREALLESNSF------------------FGGKTGPYEMPRERSIDID  211 (223)
T ss_pred             -----HHHCCCCCC----CCEEEEECCEEEEEEHHHHHHCCCC------------------CCCCEEEEEECCCCEECCC
T ss_conf             -----110676446----7604786048999999999854980------------------3897799994887168489


Q ss_pred             CHHHHHHHHHHH
Q ss_conf             999999999997
Q gi|254780765|r  237 TTNDLEKVRTLI  248 (268)
Q Consensus       237 t~~Dl~~v~~il  248 (268)
T Consensus       212 ~~~Dl~~Ae~ll  223 (223)
T cd02513         212 TEEDFELAEALL  223 (223)
T ss_pred             CHHHHHHHHHHC
T ss_conf             999999999869