HHsearch alignment for GI: 254780765 and conserved domain: cd02525
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=96.54 E-value=0.045 Score=33.20 Aligned_cols=204 Identities=20% Similarity=0.169 Sum_probs=94.8
Q ss_pred EEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHCCC----CEEEEEC----CCC-C-HHHHCCCCC-CCCCCCCCC
Q ss_conf 6999817767888988500000672266899999996799----8699986----833-0-001000122-222222223
Q gi|254780765|r 10 VLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANI----GRVIVAV----DDT-K-INEIVLQAG-FESVMTHTS 78 (268)
Q Consensus 10 i~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s~~----~~viVaT----dd~-~-I~~~~~~~g-~~~i~t~~~ 78 (268)
T Consensus 2 VSViIp~yN~~--------------~~l~~~l~Sl~~q~yp~~~~EVIvVDd~S~D~t~~~~~~~~~~~~~i~~~-~~~~ 66 (249)
T cd02525 2 VSIIIPVRNEE--------------KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLI-DNPK 66 (249)
T ss_pred EEEEECCCCCH--------------HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEC-CCCC
T ss_conf 89999356978--------------99999999998468999988999998959615699999997407713211-3555
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCC
Q ss_conf 45652048999974223345210000152210100000122333210134432111111220110037544314651454
Q gi|254780765|r 79 HQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPS 158 (268)
Q Consensus 79 ~~~GTdRi~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~ 158 (268)
T Consensus 67 --~~---~~~a~N~gi~~a~gd~i~~lD~D~~-~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~-~~---~~~~~~~ 136 (249)
T cd02525 67 --RI---QSAGLNIGIRNSRGDIIIRVDAHAV-YPKDYILELVEALKRTGADNVGGPMETIGESKFQ-KA---IAVAQSS 136 (249)
T ss_pred --CC---HHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHH-HH---HHHHHHC
T ss_conf --65---8999989899668776884147765-6956999999998778971999888506897277-77---7887626
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHH-HHHHHCCCEEEEEEECC-CCCCCC
Q ss_conf 4420011110357775311122352013552002333332079982111208447-98997896266998458-888768
Q gi|254780765|r 159 ENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQ-LRALEARMRIDVKIVQS-NAMSVD 236 (268)
Q Consensus 159 ~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEq-LR~leng~~I~~~~~~~-~~~~ID 236 (268)
T Consensus 137 ~~~~~~~~~--~~~--~~~~~~~~~~~~~~~rr~~~~~iGgfde~-~~~~ED~dl~~R~~~~G~ki~~~p~a~v~h~~~~ 211 (249)
T cd02525 137 PLGSGGSAY--RGG--AVKIGYVDTVHHGAYRREVFEKVGGFDES-LVRNEDAELNYRLRKAGYKIWLSPDIRVYYYPRS 211 (249)
T ss_pred CCCCCCCCC--CCC--CCCCCEECCEEEEEEEHHHHHHHCCCCCC-CCCCHHHHHHHHHHHCCCEEEEECCEEEEEECCC
T ss_conf 432352000--132--24584542135798888899973899877-7823899999999976997999188799998999
Q ss_pred CHHHHHH
Q ss_conf 9999999
Q gi|254780765|r 237 TTNDLEK 243 (268)
Q Consensus 237 t~~Dl~~ 243 (268)
T Consensus 212 s~~~~~~ 218 (249)
T cd02525 212 TLKKLAR 218 (249)
T ss_pred CHHHHHH
T ss_conf 9999999