HHsearch alignment for GI: 254780765 and conserved domain: cd02538

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.70  E-value=4.7e-16  Score=120.47  Aligned_cols=221  Identities=16%  Similarity=0.164  Sum_probs=135.9

Q ss_pred             EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCC---CHHHHC---CCCCCCCCCCCCC
Q ss_conf             998177678889-------885000006722668999999967998699986833---000100---0122222222223
Q gi|254780765|r   12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVDDT---KINEIV---LQAGFESVMTHTS   78 (268)
Q Consensus        12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTdd~---~I~~~~---~~~g~~~i~t~~~   78 (268)
T Consensus         3 avILAgG~GtRL~PlT~~~P-KpLlpi~~kPli~~~l~~l~~~Gi~~i~iv~~~~~~~~~~~~~~~~~~~~~~i~y~~e~   81 (240)
T cd02538           3 GIILAGGSGTRLYPLTKVVS-KQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSDLGIRITYAVQP   81 (240)
T ss_pred             EEEECCCCCCCCCCCCCCCC-CCCCEECCEEEHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHCCCCCCEEEEEEEEE
T ss_conf             99988878667873237987-43277999971899999999859962310023426999999974476375279999986


Q ss_pred             CCCCCHHHHHHHHHHCCCC-CCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECC
Q ss_conf             4565204899997422334-521000015221010000012233321013443211111122011003754431465145
Q gi|254780765|r   79 HQSGSDRIFEALNIIDSDK-KSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASP  157 (268)
Q Consensus        79 ~~~GTdRi~ea~~~l~~~~-~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~  157 (268)
T Consensus        82 ~~~Gt~---~al~~a~~~~~~~~~~v-~~gD~i~-~~~~~~~~l~~~~~~~~~~ti~~~~v~~~~~yG---v--v~~d~~  151 (240)
T cd02538          82 KPGGLA---QAFIIGEEFIGDDPVCL-ILGDNIF-YGQGLSPILQRAAAQKEGATVFGYEVNDPERYG---V--VEFDEN  151 (240)
T ss_pred             CCCCCC---HHHHHHHHHCCCCCEEE-ECCCCEE-CCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCC---C--CCCCCC
T ss_conf             268631---37888887628987344-4387401-065689999999966688478777723611367---2--311478


Q ss_pred             CCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCHHHCCHHHHH-HHHCCC-EEEEEEECCCCCCC
Q ss_conf             4442001111035777531112235201355200233333207998211120844798-997896-26699845888876
Q gi|254780765|r  158 SENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLR-ALEARM-RIDVKIVQSNAMSV  235 (268)
Q Consensus       158 ~~~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lEqLR-~leng~-~I~~~~~~~~~~~I  235 (268)
T Consensus       152 -----~~v~~~~EK--P~~~~s~~~~~GiYi~~~~i~~~i~~~~~~~~ge~~i~d~~~~~i~~g~~~~~~~~~~~~W~Di  224 (240)
T cd02538         152 -----GRVLSIEEK--PKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDT  224 (240)
T ss_pred             -----CCEEEEEEC--CCCCCCCEEEEEEEEECHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCEEEEECCCCEEEEC
T ss_conf             -----857898889--9999988799999998989999998589999990758899999998599739996899808979


Q ss_pred             CCHHHHHHHHHHHHC
Q ss_conf             899999999999730
Q gi|254780765|r  236 DTTNDLEKVRTLIPH  250 (268)
Q Consensus       236 Dt~~Dl~~v~~il~~  250 (268)
T Consensus       225 Gtpe~~~~An~~i~~  239 (240)
T cd02538         225 GTHESLLEASNFVQT  239 (240)
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             999999999988964