HHsearch alignment for GI: 254780765 and conserved domain: cd02540

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.90  E-value=1.7e-22  Score=160.75  Aligned_cols=213  Identities=21%  Similarity=0.316  Sum_probs=146.0

Q ss_pred             EEEECCCCCCCC----CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECC--CCCHHHHCCCCCCCCCCCCCCCCCCC-H
Q ss_conf             998177678889----8850000067226689999999679986999868--33000100012222222222345652-0
Q gi|254780765|r   12 VIIPARLNSMRF----PKKILADINGLPMILHTAIRARKANIGRVIVAVD--DTKINEIVLQAGFESVMTHTSHQSGS-D   84 (268)
Q Consensus        12 ~iIpAR~~S~Rl----p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTd--d~~I~~~~~~~g~~~i~t~~~~~~GT-d   84 (268)
T Consensus         1 AvIlAaG~GtRl~~~~P-Kpllpi~~kpii~~ii~~l~~~gi~~i~iv~~~~~e~i~~~~~~~~i~~v~--Q~~~lGta~   77 (229)
T cd02540           1 AVILAAGKGTRMKSDLP-KVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANPNVEFVL--QEEQLGTGH   77 (229)
T ss_pred             CEEECCCCCCCCCCCCC-CCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEEE--ECCCCCCHH
T ss_conf             98946878757998978-415189987999999999997699759963576899999875438726998--068897378


Q ss_pred             HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHH
Q ss_conf             48999974223345210000152210100000122333210134432111111220110037544314651454442001
Q gi|254780765|r   85 RIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFR  164 (268)
Q Consensus        85 Ri~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~  164 (268)
T Consensus        78 Av~~a~~~i~~~~--~~~lVl~gD~pli~~~~l~~l~~~~~~~~~~~ti~~~~~~~p~~YG-----~v~~d~~g-----~  145 (229)
T cd02540          78 AVKQALPALKDFE--GDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYG-----RIIRDGNG-----K  145 (229)
T ss_pred             HHHHHHHHCCCCC--CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC-----EEEECCCC-----C
T ss_conf             9999987445888--7299995896453678899999999965996699998604876786-----79988999-----7


Q ss_pred             HHHCC--CCCCCCCCCCCCCCEEEEEEEHHHHHHH-HCCCCCC----CHHHCCHHHHHHHHCCCEEEEEEECC--CCCCC
Q ss_conf             11103--5777531112235201355200233333-2079982----11120844798997896266998458--88876
Q gi|254780765|r  165 ALYFT--RTKTPHGTGPFYQHLGIYAYRREALKRF-TQLSPSV----LEQRESLEQLRALEARMRIDVKIVQS--NAMSV  235 (268)
Q Consensus       165 alyfs--R~~ip~~~~~~~~hvGIy~f~~~~L~~~-~~l~~t~----lE~~E~lEqLR~leng~~I~~~~~~~--~~~~I  235 (268)
T Consensus       146 v~~ivEkk~~~~~~~~~~~~n~GiYif~~~~l~~~l~~l~~~~~~gE~~ltD~i~--~~i~~g~kv~~~~~~~~~~~~Gi  223 (229)
T cd02540         146 VLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIA--LAVADGLKVAAVLADDEEEVLGV  223 (229)
T ss_pred             EEEEEECCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHCCCCCCCCEEEHHHHHH--HHHHCCCCEEEEEECCHHHEECC
T ss_conf             8999988787654345432222799985999999998479876688788999999--99988991899992887661378


Q ss_pred             CCHHHH
Q ss_conf             899999
Q gi|254780765|r  236 DTTNDL  241 (268)
Q Consensus       236 Dt~~Dl  241 (268)
T Consensus       224 n~~~dl  229 (229)
T cd02540         224 NDRVQL  229 (229)
T ss_pred             CCHHHC
T ss_conf             897879