HHsearch alignment for GI: 254780765 and conserved domain: cd04184
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=94.30 E-value=0.46 Score=26.90 Aligned_cols=166 Identities=17% Similarity=0.242 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHCC-CC-EEEEECC---CCCHHHHCCCC-----CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 26689999999679-98-6999868---33000100012-----222222222345652048999974223345210000
Q gi|254780765|r 35 PMILHTAIRARKAN-IG-RVIVAVD---DTKINEIVLQA-----GFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVN 104 (268)
Q Consensus 35 plI~~v~~~a~~s~-~~-~viVaTd---d~~I~~~~~~~-----g~~~i~t~~~~~~GTdRi~ea~~~l~~~~~~d~vV~ 104 (268)
T Consensus 15 ~~l~~~l~Si~~Qt~~~~EiIvvDd~StD~~~~~~~~~~~~~~~~i~~~~-~~~-n~G---~~~a~N~gi~~a~geyi~f 89 (202)
T cd04184 15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVF-REE-NGG---ISAATNSALELATGEFVAL 89 (202)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCC-CCC-CCC---HHHHHHHHHHCCCCCEEEE
T ss_conf 99999999998378998799999899894789999999885188520012-678-878---9999886451368766773
Q ss_pred CCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCHHHHHCCCCCCC--CCCCCCC
Q ss_conf 152210100000122333210-1344321111112201100375443146514544420011110357775--3111223
Q gi|254780765|r 105 MQADIPNIEPEILASVLLPLQ-NPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTP--HGTGPFY 181 (268)
Q Consensus 105 lqGD~Pli~~~~Id~~i~~~~-~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~~~~~~alyfsR~~ip--~~~~~~~ 181 (268)
T Consensus 90 lD~DD-~~~p~~l~~~~~~~~~~~~~~~v~--~~---~~~~~-~~~~~~------------~~~~~~~~~~~~~~~~~~~ 150 (202)
T cd04184 90 LDHDD-ELAPHALYEVVKALNEHPDADLIY--SD---EDKID-EGGKRS------------EPFFKPDWSPDLLLSQNYI 150 (202)
T ss_pred CCCCC-EECHHHHHHHHHHHHHCCCCCEEE--CC---HHEEC-CCCCEE------------ECCCCCCCCHHHHHHCCCC
T ss_conf 27785-528439999999998689935997--37---11686-799787------------2124787798898534763
Q ss_pred CCEEEEEEEHHHHHHHHCCCCCCCHHHCCHH-HHHHHHCCCEEEEEE
Q ss_conf 5201355200233333207998211120844-798997896266998
Q gi|254780765|r 182 QHLGIYAYRREALKRFTQLSPSVLEQRESLE-QLRALEARMRIDVKI 227 (268)
Q Consensus 182 ~hvGIy~f~~~~L~~~~~l~~t~lE~~E~lE-qLR~leng~~I~~~~ 227 (268)
T Consensus 151 ~~--~~~~rr~~~~~iGgfde~-~~~~eD~dl~lRl~~~g~ki~~ip 194 (202)
T cd04184 151 GH--LLVYRRSLVRQVGGFREG-FEGAQDYDLVLRVSEHTDRIAHIP 194 (202)
T ss_pred CH--HHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHCCEEEEEC
T ss_conf 20--366689999995898988-883169999999998199799928