HHsearch alignment for GI: 254780765 and conserved domain: cd04197
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.00 E-value=3.3e-09 Score=77.74 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=72.6
Q ss_pred EEEECCCCCCCC-------CCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECC--CCCHHHHCCCCC----------CCC
Q ss_conf 998177678889-------8850000067226689999999679986999868--330001000122----------222
Q gi|254780765|r 12 VIIPARLNSMRF-------PKKILADINGLPMILHTAIRARKANIGRVIVAVD--DTKINEIVLQAG----------FES 72 (268)
Q Consensus 12 ~iIpAR~~S~Rl-------p~K~L~~i~gkplI~~v~~~a~~s~~~~viVaTd--d~~I~~~~~~~g----------~~~ 72 (268)
T Consensus 3 AVIlAgg~gtRl~PlT~~~P-K~LlPv~n~Pli~y~l~~L~~~G~~ei~v~~~~~~~~i~~~~~~~~~~~~~~~~~~v~~ 81 (217)
T cd04197 3 AVVLADSFNRRFRPLTKEKP-RCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVII 81 (217)
T ss_pred EEEECCCCCCCCCHHHCCCC-CCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 99987888772562035898-65337999983999999999879977999946899999999984322156677734899
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCC--CCCCEEEECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 222223456520489999742233--452100001522101000001223332101
Q gi|254780765|r 73 VMTHTSHQSGSDRIFEALNIIDSD--KKSQIIVNMQADIPNIEPEILASVLLPLQN 126 (268)
Q Consensus 73 i~t~~~~~~GTdRi~ea~~~l~~~--~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~ 126 (268)
T Consensus 82 ~-~~~~~-~~---~Gdalr~l~~~~~i~~dFl-v~~gD~--it~~~l~~~l~~Hr~ 129 (217)
T cd04197 82 I-MSEDC-RS---LGDALRDLDAKGLIRGDFI-LVSGDV--VSNIDLKEILEEHKE 129 (217)
T ss_pred E-ECCCC-CC---HHHHHHHHHHHCCCCCCEE-EEECCC--EECCCHHHHHHHHHH
T ss_conf 7-56888-76---5169998876044789999-997990--413788999999986