HHsearch alignment for GI: 254780765 and conserved domain: pfam01128

>pfam01128 IspD Uncharacterized protein family UPF0007.
Probab=99.64  E-value=5.4e-15  Score=113.86  Aligned_cols=210  Identities=17%  Similarity=0.232  Sum_probs=132.3

Q ss_pred             EEEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCC---HHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             6999817767888988---50000067226689999999679-986999868330---0010001222222222234565
Q gi|254780765|r   10 VLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKAN-IGRVIVAVDDTK---INEIVLQAGFESVMTHTSHQSG   82 (268)
Q Consensus        10 i~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~---I~~~~~~~g~~~i~t~~~~~~G   82 (268)
T Consensus         1 V~aIIlAaG~G~R~~~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~i~~v------~GG   74 (221)
T pfam01128         1 VVAVIPAAGSGKRMGAGVPKQFLQLLGQPLLEHTVDAFLASPVVDRIVVAVSPDDTPEFRQLLGDPSIQLV------AGG   74 (221)
T ss_pred             CEEEEECCEECCCCCCCCCCCCCEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCCCCCEEEE------CCC
T ss_conf             98999358106126958986536689888999999999638888979999677889999986079987996------799


Q ss_pred             CHH---HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCC
Q ss_conf             204---89999742233452100001522101000001223332101344321111112201100375443146514544
Q gi|254780765|r   83 SDR---IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSE  159 (268)
Q Consensus        83 TdR---i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~  159 (268)
T Consensus        75 ~tR~~SV~ngL~~l~~--~~~~VlIHDaaRP~v~~~~i~~li~~~~~-~~~~~i~~~p~~DT--------ik~v~-~~~~  142 (221)
T pfam01128        75 DTRQDSVLNGLKALAG--TAKFVLVHDGARPCLPHADLARLLAALET-GTQGAILALPVTDT--------IKRVE-ADGV  142 (221)
T ss_pred             CCHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEECCCCC--------EEEEC-CCCC
T ss_conf             6389999999998358--99989998365667999999999999860-04861354124664--------35753-7860


Q ss_pred             CCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHC-CCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCH
Q ss_conf             4200111103577753111223520135520023333320-799821112084479899789626699845888876899
Q gi|254780765|r  160 NGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQ-LSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTT  238 (268)
Q Consensus       160 ~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~-l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~  238 (268)
T Consensus       143 --i~~--t~dR-------~~l~~~QTPQ~F~~~~L~~a~~~~~~~~~~~TDd~sl~--~~~g~~v~~v~G~~~N~KIT~~  209 (221)
T pfam01128       143 --VAG--TPDR-------SGLWAAQTPQGFRVDLLLAAHQRGDQPGAEITDDASLV--EHAGGSVQVVPGRPDNLKITTP  209 (221)
T ss_pred             --EEC--CCCC-------HHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH--HHCCCCEEEEECCCCCCCCCCH
T ss_conf             --440--3564-------21011007620069999999998886299976299999--9779977999658423887899


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999730
Q gi|254780765|r  239 NDLEKVRTLIPH  250 (268)
Q Consensus       239 ~Dl~~v~~il~~  250 (268)
T Consensus       210 eDl~~ae~lL~k  221 (221)
T pfam01128       210 EDLALAEAILRR  221 (221)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999999676