HHsearch alignment for GI: 254780765 and conserved domain: pfam01128
>pfam01128 IspD Uncharacterized protein family UPF0007.
Probab=99.64 E-value=5.4e-15 Score=113.86 Aligned_cols=210 Identities=17% Similarity=0.232 Sum_probs=132.3
Q ss_pred EEEEEECCCCCCCCCC---CEECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCC---HHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 6999817767888988---50000067226689999999679-986999868330---0010001222222222234565
Q gi|254780765|r 10 VLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKAN-IGRVIVAVDDTK---INEIVLQAGFESVMTHTSHQSG 82 (268)
Q Consensus 10 i~~iIpAR~~S~Rlp~---K~L~~i~gkplI~~v~~~a~~s~-~~~viVaTdd~~---I~~~~~~~g~~~i~t~~~~~~G 82 (268)
T Consensus 1 V~aIIlAaG~G~R~~~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~i~~v------~GG 74 (221)
T pfam01128 1 VVAVIPAAGSGKRMGAGVPKQFLQLLGQPLLEHTVDAFLASPVVDRIVVAVSPDDTPEFRQLLGDPSIQLV------AGG 74 (221)
T ss_pred CEEEEECCEECCCCCCCCCCCCCEECCEEHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCCCCCEEEE------CCC
T ss_conf 98999358106126958986536689888999999999638888979999677889999986079987996------799
Q ss_pred CHH---HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCC
Q ss_conf 204---89999742233452100001522101000001223332101344321111112201100375443146514544
Q gi|254780765|r 83 SDR---IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSE 159 (268)
Q Consensus 83 TdR---i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~tl~~~~~~~~~~~d~n~vKvi~~~~~~ 159 (268)
T Consensus 75 ~tR~~SV~ngL~~l~~--~~~~VlIHDaaRP~v~~~~i~~li~~~~~-~~~~~i~~~p~~DT--------ik~v~-~~~~ 142 (221)
T pfam01128 75 DTRQDSVLNGLKALAG--TAKFVLVHDGARPCLPHADLARLLAALET-GTQGAILALPVTDT--------IKRVE-ADGV 142 (221)
T ss_pred CCHHHHHHHHHHHHCC--CCCEEEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEECCCCC--------EEEEC-CCCC
T ss_conf 6389999999998358--99989998365667999999999999860-04861354124664--------35753-7860
Q ss_pred CCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHC-CCCCCCHHHCCHHHHHHHHCCCEEEEEEECCCCCCCCCH
Q ss_conf 4200111103577753111223520135520023333320-799821112084479899789626699845888876899
Q gi|254780765|r 160 NGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQ-LSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTT 238 (268)
Q Consensus 160 ~~~~~alyfsR~~ip~~~~~~~~hvGIy~f~~~~L~~~~~-l~~t~lE~~E~lEqLR~leng~~I~~~~~~~~~~~IDt~ 238 (268)
T Consensus 143 --i~~--t~dR-------~~l~~~QTPQ~F~~~~L~~a~~~~~~~~~~~TDd~sl~--~~~g~~v~~v~G~~~N~KIT~~ 209 (221)
T pfam01128 143 --VAG--TPDR-------SGLWAAQTPQGFRVDLLLAAHQRGDQPGAEITDDASLV--EHAGGSVQVVPGRPDNLKITTP 209 (221)
T ss_pred --EEC--CCCC-------HHHEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH--HHCCCCEEEEECCCCCCCCCCH
T ss_conf --440--3564-------21011007620069999999998886299976299999--9779977999658423887899
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999730
Q gi|254780765|r 239 NDLEKVRTLIPH 250 (268)
Q Consensus 239 ~Dl~~v~~il~~ 250 (268)
T Consensus 210 eDl~~ae~lL~k 221 (221)
T pfam01128 210 EDLALAEAILRR 221 (221)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999676