HHsearch results for GI: 254780765 and protein with PDBid: 3ckj_A
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=90.53 E-value=0.88 Score=23.78 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=61.7
Q ss_pred CCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHC--C-CCEEEEECC-C-CCHHHHCCCCCCCCCC-----CCC
Q ss_conf 6569998177678889885000006722668999999967--9-986999868-3-3000100012222222-----222
Q gi|254780765|r 8 EKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKA--N-IGRVIVAVD-D-TKINEIVLQAGFESVM-----THT 77 (268)
Q Consensus 8 ~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s--~-~~~viVaTd-d-~~I~~~~~~~g~~~i~-----t~~ 77 (268)
.++-+|||++-... -|..+++.+... . ..+|+|+-| | +.=.+.+++++..++- ...
T Consensus 48 ~~vSVVIP~yNE~~--------------~I~~~l~si~~~~~~~~~EIIVVDDgStD~T~ei~~~~~a~v~~~~~~~~~~ 113 (329)
T 3ckj_A 48 RTISVVLPALDEED--------------TIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEV 113 (329)
T ss_dssp CCEEEEEEESSCTT--------------THHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTS
T ss_pred CEEEEEEECCCCHH--------------HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 97999980587888--------------9999999998634699858999989794408999999625015654258733
Q ss_pred CCCCCCHH-HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 34565204-89999742233452100001522101000001223332101344321
Q gi|254780765|r 78 SHQSGSDR-IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIG 132 (268)
Q Consensus 78 ~~~~GTdR-i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~ 132 (268)
....|-.+ +..++.. ...++|+.+.||.=...|+.+.+++..+.+...+.+
T Consensus 114 ~~n~Gkg~A~~~Gl~~----A~gd~iv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~ 165 (329)
T 3ckj_A 114 PIRPGKGEALWRSLAA----SRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHL 165 (329)
T ss_dssp CCCCSHHHHHHHHHHH----CCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCE
T ss_pred CCCCCHHHHHHHHHHH----HHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 4557889999999998----522036997478888999999999999981998568