HHsearch results for GI: 254780765 and protein with PDBid: 3ckj_A

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=90.53  E-value=0.88  Score=23.78  Aligned_cols=107  Identities=17%  Similarity=0.178  Sum_probs=61.7

Q ss_pred             CCEEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHHHC--C-CCEEEEECC-C-CCHHHHCCCCCCCCCC-----CCC
Q ss_conf             6569998177678889885000006722668999999967--9-986999868-3-3000100012222222-----222
Q gi|254780765|r    8 EKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKA--N-IGRVIVAVD-D-TKINEIVLQAGFESVM-----THT   77 (268)
Q Consensus         8 ~ki~~iIpAR~~S~Rlp~K~L~~i~gkplI~~v~~~a~~s--~-~~~viVaTd-d-~~I~~~~~~~g~~~i~-----t~~   77 (268)
                      .++-+|||++-...              -|..+++.+...  . ..+|+|+-| | +.=.+.+++++..++-     ...
T Consensus        48 ~~vSVVIP~yNE~~--------------~I~~~l~si~~~~~~~~~EIIVVDDgStD~T~ei~~~~~a~v~~~~~~~~~~  113 (329)
T 3ckj_A           48 RTISVVLPALDEED--------------TIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEV  113 (329)
T ss_dssp             CCEEEEEEESSCTT--------------THHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEEHHHHCTTS
T ss_pred             CEEEEEEECCCCHH--------------HHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf             97999980587888--------------9999999998634699858999989794408999999625015654258733


Q ss_pred             CCCCCCHH-HHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             34565204-89999742233452100001522101000001223332101344321
Q gi|254780765|r   78 SHQSGSDR-IFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIG  132 (268)
Q Consensus        78 ~~~~GTdR-i~ea~~~l~~~~~~d~vV~lqGD~Pli~~~~Id~~i~~~~~~~~dv~  132 (268)
                      ....|-.+ +..++..    ...++|+.+.||.=...|+.+.+++..+.+...+.+
T Consensus       114 ~~n~Gkg~A~~~Gl~~----A~gd~iv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~  165 (329)
T 3ckj_A          114 PIRPGKGEALWRSLAA----SRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHL  165 (329)
T ss_dssp             CCCCSHHHHHHHHHHH----CCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCE
T ss_pred             CCCCCHHHHHHHHHHH----HHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf             4557889999999998----522036997478888999999999999981998568