PSIBLAST alignment of GI: 254780765 and protein with PDB id: 1vh3
>gi|40889895|pdb|1VH3|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase Length = 262
>gi|40889896|pdb|1VH3|B Chain B, Crystal Structure Of Cmp-Kdo Synthetase Length = 262
>gi|40889897|pdb|1VH3|C Chain C, Crystal Structure Of Cmp-Kdo Synthetase Length = 262
Score = 168 bits (424), Expect = 9e-40, Method: Composition-based stats.
Identities = 84/253 (33%), Positives = 126/253 (49%), Gaps = 12/253 (4%)
Query: 10 VLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAG 69
VIIPAR S R P K LADI G P I H +A ++ RVI+A D+ + ++ G
Sbjct: 3 FTVIIPARFASSRLPGKPLADIKGKPXIQHVFEKALQSGASRVIIATDNENVADVAKSFG 62
Query: 70 FESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIV 129
E T +H SG++R+ E + + ++IIVN+Q D P I P I+ V L V
Sbjct: 63 AEVCXTSVNHNSGTERLAEVVEK-LAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNV 121
Query: 130 DIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGP---------- 179
+ +L +IH + + +PN VK++ F +
Sbjct: 122 NXASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFXNLQDVQKVQLSDA 181
Query: 180 FYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNA-MSVDTT 238
+ +H+GIYAYR +K++ Q +P+ LE E LEQLR L RI V++ + + VDT
Sbjct: 182 YLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTA 241
Query: 239 NDLEKVRTLIPHD 251
DLEKVR ++ +
Sbjct: 242 EDLEKVRAILAAN 254