PSIBLAST alignment of GI: 254780765 and protein with PDB id: 1vic
>gi|40890001|pdb|1VIC|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase Length = 262
>gi|40890002|pdb|1VIC|B Chain B, Crystal Structure Of Cmp-Kdo Synthetase Length = 262
Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats.
Identities = 86/255 (33%), Positives = 129/255 (50%), Gaps = 12/255 (4%)
Query: 8 EKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQ 67
VIIPAR S R P K LADI G PMI H +A ++ RVI+A D+ + ++
Sbjct: 1 MSFTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVADVAKS 60
Query: 68 AGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNP 127
G E MT +H SG++R+ E + + ++IIVN+Q D P I P I+ V L
Sbjct: 61 FGAEVCMTSVNHNSGTERLAEVVEK-LAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKF 119
Query: 128 IVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGP-------- 179
V++ +L +IH + + +PN VK++ F +
Sbjct: 120 NVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLS 179
Query: 180 --FYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNA-MSVD 236
+ +H+GIYAYR +K++ Q +P+ LE E LEQLR L RI V++ + + VD
Sbjct: 180 DAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVD 239
Query: 237 TTNDLEKVRTLIPHD 251
T DLEKVR ++ +
Sbjct: 240 TAEDLEKVRAILAAN 254