PSIBLAST alignment of GI: 254780765 and protein with PDB id: 1vic

>gi|40890001|pdb|1VIC|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase Length = 262
>gi|40890002|pdb|1VIC|B Chain B, Crystal Structure Of Cmp-Kdo Synthetase Length = 262
 Score =  174 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 86/255 (33%), Positives = 129/255 (50%), Gaps = 12/255 (4%)

Query: 8   EKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQ 67
               VIIPAR  S R P K LADI G PMI H   +A ++   RVI+A D+  + ++   
Sbjct: 1   MSFTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVADVAKS 60

Query: 68  AGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNP 127
            G E  MT  +H SG++R+ E +    +   ++IIVN+Q D P I P I+  V   L   
Sbjct: 61  FGAEVCMTSVNHNSGTERLAEVVEK-LAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKF 119

Query: 128 IVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGP-------- 179
            V++ +L  +IH + +  +PN VK++         F        +               
Sbjct: 120 NVNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLS 179

Query: 180 --FYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNA-MSVD 236
             + +H+GIYAYR   +K++ Q +P+ LE  E LEQLR L    RI V++ +    + VD
Sbjct: 180 DAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVD 239

Query: 237 TTNDLEKVRTLIPHD 251
           T  DLEKVR ++  +
Sbjct: 240 TAEDLEKVRAILAAN 254