RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780765|ref|YP_003065178.1| 3-deoxy-manno-octulosonate
cytidylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(268 letters)
>gnl|CDD|133010 cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the
activation of KDO which is an essential component of the
lipopolysaccharide. CMP-KDO Synthetase:
3-Deoxy-D-manno-octulosonate cytidylyltransferase
(CMP-KDO synthetase) catalyzes the conversion of CTP and
3-deoxy-D-manno-octulosonate into
CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and
pyrophosphate. KDO is an essential component of the
lipopolysaccharide found in the outer surface of
gram-negative eubacteria. It is also a constituent of
the capsular polysaccharides of some gram-negative
eubacteria. Its presence in the cell wall
polysaccharides of green algae and plant were also
discovered. However, they have not been found in yeast
and animals. The absence of the enzyme in mammalian
cells makes it an attractive target molecule for drug
design.
Length = 239
Score = 266 bits (683), Expect = 4e-72
Identities = 111/244 (45%), Positives = 148/244 (60%), Gaps = 14/244 (5%)
Query: 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQ 67
KV+V+IPAR S R P K LADI G PMI H RA+KA + V+VA DD +I + V
Sbjct: 1 KVIVVIPARYASSRLPGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDERIADAVES 60
Query: 68 AGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQ-N 126
G + VMT H SG+DRI E +D+D I+VN+Q D P I PE++ V+ L+ +
Sbjct: 61 FGGKVVMTSPDHPSGTDRIAEVAEKLDADDD--IVVNVQGDEPLIPPEMIDQVVAALKDD 118
Query: 127 PIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRT-----KTPHGTGPFY 181
P VD+ TL T I + +PN+VK+V+ ++G ALYF+R+ + P+Y
Sbjct: 119 PGVDMATLATPISDEEELFNPNVVKVVL---DKDG--YALYFSRSPIPYPRDSSEDFPYY 173
Query: 182 QHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDL 241
+H+GIYAYRR+ L RF L PS LEQ ESLEQLRALE +I V ++ VDT DL
Sbjct: 174 KHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDL 233
Query: 242 EKVR 245
E+V
Sbjct: 234 ERVE 237
>gnl|CDD|31405 COG1212, KdsB, CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell
envelope biogenesis, outer membrane].
Length = 247
Score = 259 bits (664), Expect = 4e-70
Identities = 113/246 (45%), Positives = 150/246 (60%), Gaps = 12/246 (4%)
Query: 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQA 68
K +VIIPARL S R P K LADI G PMI+ A RA K+ RV+VA DD +I E V
Sbjct: 3 KFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERALKSGADRVVVATDDERIAEAVQAF 62
Query: 69 GFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPI 128
G E+VMT HQSG+DR+ E + + +IIVN+Q D P IEPE++ +V L+N
Sbjct: 63 GGEAVMTSKDHQSGTDRLAEVVEKLGLP-DDEIIVNVQGDEPFIEPEVIRAVAENLENSN 121
Query: 129 VDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPH-----GTGPFYQH 183
D+ TL +I + +PN+VK+V + ALYF+R P+ G PF +H
Sbjct: 122 ADMATLAVKITDEEEAFNPNVVKVV-----LDKEGYALYFSRAPIPYGRDNFGGTPFLRH 176
Query: 184 LGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSN-AMSVDTTNDLE 242
+GIYAYR L+RF L PS LE+ ESLEQLR LE +I V+IV+ ++ VDT DLE
Sbjct: 177 IGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLE 236
Query: 243 KVRTLI 248
+VR ++
Sbjct: 237 RVRKIL 242
>gnl|CDD|145475 pfam02348, CTP_transf_3, Cytidylyltransferase. This family
consists of two main Cytidylyltransferase activities: 1)
3-deoxy-manno-octulosonate cytidylyltransferase,,
EC:2.7.7.38 catalysing the reaction:- CTP +
3-deoxy-D-manno-octulosonate <=> diphosphate +
CMP-3-deoxy-D-manno-octulosonate, 2) acylneuraminate
cytidylyltransferase EC:2.7.7.43,, catalysing the
reaction:- CTP + N-acylneuraminate <=> diphosphate +
CMP-N-acylneuraminate. NeuAc cytydilyltransferase of
Mannheimia haemolytica has been characterized describing
kinetics and regulation by substrate charge, energetic
charge and amino-sugar demand.
Length = 197
Score = 130 bits (328), Expect = 5e-31
Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 15/204 (7%)
Query: 11 LVIIPARLNSMRFPKKILADINGLPMILHTAIRARK-ANIGRVIVAVDDTKINEIVLQAG 69
+ IIPAR S R P K L + G P+I A + +V+VA D +I +I + G
Sbjct: 1 IAIIPARSGSKRLPGKNLLKLGGKPLIARVIEAALQSKLFDKVVVATDSEEIADIAEKFG 60
Query: 70 FESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPE-ILASVLLPLQNPI 128
V+ S SG+DR EA+ +D +IIVN+Q D P ++P IL ++ +
Sbjct: 61 GGVVVRRGSLASGTDRFIEAVKAFLAD--EEIIVNLQGDEPLLQPTSILRAIEHLREAGE 118
Query: 129 VDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGT------GPFYQ 182
+ TL + S + +PN +K+V+ ALYF+R+ P+ + +
Sbjct: 119 DYVSTLVKPVVSSEEILNPNPLKVVLDDAG-----YALYFSRSPIPYIRDHPAPLQLYLR 173
Query: 183 HLGIYAYRREALKRFTQLSPSVLE 206
H GIYA+R+E L R+ +PS LE
Sbjct: 174 HKGIYAFRKEHLIRYVIDTPSDLE 197
>gnl|CDD|133011 cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase implicated in the
synthesis of the spore coat. Spore coat polysaccharide
biosynthesis protein F (spsF) is a glycosyltransferase
implicated in the synthesis of the spore coat in a
variety of bacteria challenged by stress as starvation.
The spsF gene is expressed in the late stage of coat
development responsible for a terminal step in coat
formation that involves the glycosylation of the coat.
SpsF gene mutation resulted in spores that appeared
normal. But, the spores tended to aggregate and had
abnormal adsorption properties, indicating a surface
alteration.
Length = 233
Score = 60.3 bits (147), Expect = 6e-10
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 25/132 (18%)
Query: 11 LVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVA----VDDTKINEIV 65
+ II AR+ S R P K+L + G P++ H R +++ I +++A +D + +
Sbjct: 1 VAIIQARMGSTRLPGKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALA 60
Query: 66 LQAGF-------ESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILA 118
+ G E V+ R ++A ++D ++V + D P I+PEI+
Sbjct: 61 KKLGVKVFRGSEEDVL---------GRYYQAAEEYNAD----VVVRITGDCPLIDPEIID 107
Query: 119 SVLLPLQNPIVD 130
+V+ D
Sbjct: 108 AVIRLFLKSGAD 119
>gnl|CDD|133006 cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates
N-acetylneuraminic acid by adding CMP moiety.
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc
synthetase) or acylneuraminate cytidylyltransferase
catalyzes the transfer the CMP moiety of CTP to the
anomeric hydroxyl group of NeuAc in the presence of
Mg++. It is the second to last step in the sialylation
of the oligosaccharide component of glycoconjugates by
providing the activated sugar-nucleotide cytidine
5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac),
the substrate for sialyltransferases. Eukaryotic
CMP-NeuAc synthetases are predominantly located in the
nucleus. The activated CMP-Neu5Ac diffuses from the
nucleus into the cytoplasm.
Length = 223
Score = 54.5 bits (132), Expect = 3e-08
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQ 67
K+L IIPAR S P K + + G P+I T A ++ RV+V+ DD +I E+ +
Sbjct: 1 KILAIIPARGGSKGIPGKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEEIAEVARK 60
Query: 68 AGFESVM-------THTSHQSGSDRIFEALNIIDS-DKKSQIIVNMQA 107
G E T T+ S D I AL+ ++ + I+V +Q
Sbjct: 61 YGAEVPFLRPAELATDTA--SSIDVILHALDQLEELGRDFDIVVLLQP 106
>gnl|CDD|32046 COG1861, SpsF, Spore coat polysaccharide biosynthesis protein F,
CMP-KDO synthetase homolog [Cell envelope biogenesis,
outer membrane].
Length = 241
Score = 50.3 bits (120), Expect = 6e-07
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 7 KEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKA-NIGRVIVAVDDTKINEIV 65
+LVII AR+ S R P K+L + G PMI + R RK+ ++ +++VA D + ++ +
Sbjct: 1 MSMILVIIQARMGSTRLPGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDAL 60
Query: 66 LQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLL 122
+ + + + I + ++V + D P ++PE++ + +
Sbjct: 61 --EEVCRSHGFYVFRGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVD 115
>gnl|CDD|31280 COG1083, NeuA, CMP-N-acetylneuraminic acid synthetase [Cell
envelope biogenesis, outer membrane].
Length = 228
Score = 41.0 bits (96), Expect = 3e-04
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQ 67
K + IIPAR S K + G P+I +T A + +V+++ D +I E +
Sbjct: 3 KNIAIIPARGGSKGIKNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEEAKK 62
Query: 68 AG 69
G
Sbjct: 63 YG 64
>gnl|CDD|32447 COG2266, COG2266, GTP:adenosylcobinamide-phosphate
guanylyltransferase [Coenzyme metabolism].
Length = 177
Score = 35.6 bits (82), Expect = 0.013
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 21 MRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDD--TKINEIVLQAGFESVMTHTS 78
M P+K L ++ G P+I + A + + +IVA+ K E + G + + T
Sbjct: 14 MGRPEKPLLEVCGKPLIDRV-LEALRKIVDEIIVAISPHTPKTKEYLESVGVKVIET--- 69
Query: 79 HQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTL 134
G + + ++S ++V+ AD+P + P I+ SV+ + V I T+
Sbjct: 70 --PGEGYVEDLRFALESLGTPILVVS--ADLPFLNPSIIDSVIDAAASVEVPIVTV 121
>gnl|CDD|32251 COG2068, COG2068, Uncharacterized MobA-related protein [General
function prediction only].
Length = 199
Score = 35.6 bits (82), Expect = 0.013
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 9 KVLVIIPARLNSMRF-PKKILADINGLPMILHTAIRARKANIGRVIVAV--DDTKINEIV 65
V ++ A S R K+LA ++G P++ +A A A + RVIV + E +
Sbjct: 5 TVAAVVLAAGRSSRMGQPKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEAL 64
Query: 66 LQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVL 121
L +V+ + + G +A + +D + +V M D+P + P + ++
Sbjct: 65 LAQLGVTVVVNPDYAQGLSTSLKAG-LRAADAEGDGVVLMLGDMPQVTPATVRRLI 119
>gnl|CDD|31400 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase
(contains nucleotidyltransferase and I-patch
acetyltransferase domains) [Cell envelope biogenesis,
outer membrane].
Length = 460
Score = 34.4 bits (79), Expect = 0.038
Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 19/141 (13%)
Query: 26 KILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQS---- 81
K+L + G PM+ H AR ++V V E V +A E Q
Sbjct: 22 KVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGA--EQVREALAERDDVEFVLQEEQLG 79
Query: 82 GSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGS 141
+ +AL + D ++V + D+P I E L +L L +
Sbjct: 80 TGHAVLQALPALADDYDGDVLV-LYGDVPLITAETLEELLAAHPAHGAAATVLTAEL--- 135
Query: 142 TDP---------DDPNIVKIV 153
DP + + IV
Sbjct: 136 DDPTGYGRIVRDGNGEVTAIV 156
>gnl|CDD|133025 cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the
glycosyltransferase family 2 (GT-2) with unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 186
Score = 34.1 bits (79), Expect = 0.045
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 10 VLVIIPARLNSMRFPK-KILADINGLPMILHTAIRARKANIGRVIVAV 56
+ II A S R K+L ++G P++ H A A + RVIV +
Sbjct: 1 IAAIILAAGRSSRMGGNKLLLPLDGKPLLRHALDAALAAGLSRVIVVL 48
>gnl|CDD|31089 COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis
protein A [Coenzyme metabolism].
Length = 192
Score = 31.8 bits (72), Expect = 0.20
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 20 SMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDD 58
S R K L +NG P+I H R R VI A +
Sbjct: 15 SRRMRDKALLPLNGRPLIEHVIDRLRPQVDVVVISANRN 53
>gnl|CDD|32634 COG2802, COG2802, Uncharacterized protein, similar to the
N-terminal domain of Lon protease [General function
prediction only].
Length = 221
Score = 30.7 bits (69), Expect = 0.42
Identities = 23/144 (15%), Positives = 38/144 (26%), Gaps = 19/144 (13%)
Query: 85 RIFEA--LNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGST 142
IFE L ++ + + + + V L + D+G L
Sbjct: 31 NIFEPRYLAMVRTCLAEGRRFGV------VLIDRGREVGGGLPPELSDVGCLARITEFEE 84
Query: 143 DPDDPNIVKIVVASPSENGCFRALYFTRTKTPH--GTGPFYQHLGIYAYRREALKR---- 196
D ++ + FR L P+ PF+ L E + R
Sbjct: 85 LGDGRYLILVRGGQ-----RFRVLEELADDDPYRRARVPFWPDLPSDPDGAEEVDRRLDA 139
Query: 197 FTQLSPSVLEQRESLEQLRALEAR 220
+ QR L R
Sbjct: 140 LLMRAARAYLQRLELLADWESYER 163
>gnl|CDD|133009 cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in
mevalonate-independent isoprenoid production.
4-diphosphocytidyl-2-methyl-D-erythritol synthase
(CDP-ME), also called 2C-methyl-d-erythritol
4-phosphate cytidylyltransferase catalyzes the third
step in the alternative (non-mevalonate) pathway of
Isopentenyl diphosphate (IPP) biosynthesis: the
formation of 4-diphosphocytidyl-2C-methyl-D-erythritol
from CTP and 2C-methyl-D-erythritol 4-phosphate. This
mevalonate independent pathway that utilizes pyruvate
and glyceraldehydes 3-phosphate as starting materials
for production of IPP occurs in a variety of bacteria,
archaea and plant cells, but is absent in mammals. Thus,
CDP-ME synthetase is an attractive targets for the
structure-based design of selective antibacterial,
herbicidal and antimalarial drugs.
Length = 218
Score = 30.6 bits (70), Expect = 0.45
Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 22/124 (17%)
Query: 12 VIIPA-----RLNSMRFPKKILADINGLPMILHTAIRA--RKANIGRVIVAV--DDTKIN 62
II A R+ + K ++ G P++ HT + A I ++V V DD +
Sbjct: 3 AIILAAGSGSRMGADI--PKQFLELGGKPVLEHT-LEAFLAHPAIDEIVVVVPPDDIDLA 59
Query: 63 EIVLQAGFESVMTHTSHQSGSDR---IFEALNIIDSDKKSQIIVNMQADI--PNIEPEIL 117
+ + + G V+ + G+ R + L + ++++ D P + PE++
Sbjct: 60 KELAKYGLSKVVKIV--EGGATRQDSVLNGLKALPDADPDIVLIH---DAARPFVSPELI 114
Query: 118 ASVL 121
++
Sbjct: 115 DRLI 118
>gnl|CDD|31401 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase
involved in lipopolysaccharide biosynthesis/translation
initiation factor 2B, gamma/epsilon subunits
(eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis,
outer membrane / Translation, ribosomal structure and
biogenesis].
Length = 358
Score = 28.8 bits (64), Expect = 1.6
Identities = 39/227 (17%), Positives = 68/227 (29%), Gaps = 20/227 (8%)
Query: 26 KILADINGLPMILHTAIRARKANIGRVIVAVD--DTKINEIVLQAGFESVMTHTSHQSGS 83
K L I G P+I + A + +++ V +I E V +
Sbjct: 24 KPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEKEP 83
Query: 84 DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTD 143
AL + + D+ L+ +L + TR+ D
Sbjct: 84 LGTAGALKNALDLLGGDDFLVLNGDVLTDLD--LSELLEFHKKKGALATIALTRV---LD 138
Query: 144 PDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPS 203
P + +V+ ++G R + F P + GIY + E +
Sbjct: 139 PSEFGVVET------DDGDGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERF 192
Query: 204 VLEQRESLEQLRALEARMRIDVKIVQSNA--MSVDTTNDLEKVRTLI 248
E E+L A DV + + T DL + L+
Sbjct: 193 DFE-----EELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELL 234
>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine
cytidylyltransferases catalyze the synthesis of
CDP-choline. This family contains proteins similar to
prokaryotic phosphocholine (P-cho)
cytidylyltransferases. Phosphocholine (PC)
cytidylyltransferases catalyze the transfer of a
cytidine monophosphate from CTP to phosphocholine to
form CDP-choline. PC is the most abundant phospholipid
in eukaryotic membranes and it is also important in
prokaryotic membranes. For pathogenic prokaryotes, the
cell surface PC facilitates the interaction with host
surface and induces attachment and invasion. In
addition cell wall PC serves as scaffold for a group of
choline-binding proteins that are secreted from the
cells. Phosphocholine (PC) cytidylyltransferase is a
key enzyme in the prokaryotic choline metabolism
pathway. It has been hypothesized to consist of a
choline transport system, a choline kinase,
CTP:phosphocholine cytidylyltransferase, and a choline
phosphotransferase that transfers P-Cho from CDP-Cho to
either lipoteichoic acid or lipopolysaccharide.
Length = 229
Score = 28.7 bits (65), Expect = 1.6
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 26 KILADINGLPMILHTAIRARKANIGRVIVAV 56
K L +ING P++ ++A I +++
Sbjct: 21 KCLLEINGKPLLERQIETLKEAGIDDIVIVT 51
>gnl|CDD|37300 KOG2089, KOG2089, KOG2089, Metalloendopeptidase family -
saccharolysin & thimet oligopeptidase [Posttranslational
modification, protein turnover, chaperones].
Length = 718
Score = 28.8 bits (64), Expect = 1.7
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 14/91 (15%)
Query: 171 TKTPHGTGPFYQHLGIYAYRREALKRFTQLSPS-VLEQRESLEQLRALEAR--------- 220
T P +H I R+ + + + LE +EQL L
Sbjct: 243 TLKYPHYFPVMKHCKIRQTRKTVWRAYNSRASEGDLENSAIIEQLLKLRLELAKLLGYST 302
Query: 221 ---MRIDVKIVQSNAMSVDTTNDL-EKVRTL 247
+ +K+ +S+ V+ +DL +K+R L
Sbjct: 303 YADYSLAMKMAKSSETVVEFLDDLSQKLRPL 333
>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a
member of the nucleotidyl transferase family. This is
a subfamily of nucleotidyl transferases. Nucleotidyl
transferases transfer nucleotides onto phosphosugars.
The activated sugars are precursors for synthesis of
lipopolysaccharide, glycolipids and polysaccharides.
Other subfamilies of nucleotidyl transferases include
Alpha-D-Glucose-1-Phosphate Cytidylyltransferase,
Mannose-1-phosphate guanyltransferase, and
Glucose-1-phosphate thymidylyltransferase.
Length = 221
Score = 28.7 bits (65), Expect = 1.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 26 KILADINGLPMILHTAIRARKANIGRVIV 54
K L + G P+I H R A I R++V
Sbjct: 22 KPLVPVAGKPLIDHALDRLAAAGIRRIVV 50
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine..
Length = 345
Score = 28.7 bits (65), Expect = 1.9
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 72 SVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVDI 131
S H S + + + + ++ D+ ++ D +E I L NPI+ +
Sbjct: 101 SDQAHVSVEKAAAYLDVKVRLVPVDEDGRM------DPEALEAAIDEDKAEGL-NPIMVV 153
Query: 132 GTLGTRIHGSTDP 144
T GT G+ DP
Sbjct: 154 ATAGTTDTGAIDP 166
>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of
nucleotidyl transferases. WcbM protein of Burkholderia
mallei is involved in the biosynthesis, export or
translocation of capsule. It is a subfamily of
nucleotidyl transferases that transfer nucleotides onto
phosphosugars.
Length = 223
Score = 28.3 bits (64), Expect = 2.1
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 185 GIYAYRREALKRFTQLSPS----VLEQRESLEQLRALEARMR-IDVKIVQS 230
G+Y R+E L + S VL +L E ID+ I +
Sbjct: 168 GVYLLRKEILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPED 218
>gnl|CDD|176140 cd08449, PBP2_XapR, The C-terminal substrate binding domain of
LysR-type transcriptional regulator XapR involved in
xanthosine catabolism, contains the type 2 periplasmic
binding fold. In Escherichia coli, XapR is a positive
regulator for the expression of xapA gene, encoding
xanthosine phosphorylase, and xapB gene, encoding a
polypeptide similar to the nucleotide transport protein
NupG. As an operon, the expression of both xapA and xapB
is fully dependent on the presence of both XapR and the
inducer xanthosine. Expression of the xapR is
constitutive but not auto-regulated, unlike many other
LysR family proteins. This substrate-binding domain
shows significant homology to the type 2 periplasmic
binding proteins (PBP2), which are responsible for the
uptake of a variety of substrates such as phosphate,
sulfate, polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis.
Length = 197
Score = 27.6 bits (62), Expect = 3.7
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 191 REALKRFTQLSPSV----LEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDL----- 241
AL+RF + P+V E Q AL ++ RID+ V+ DT ND
Sbjct: 16 GPALRRFKRQYPNVTVRFHELSPE-AQKAALLSK-RIDLGFVR----FADTLNDPPLASE 69
Query: 242 ----EKVRTLIPHDHH 253
E + +P +H
Sbjct: 70 LLWREPMVVALPEEHP 85
>gnl|CDD|31406 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell
envelope biogenesis, outer membrane].
Length = 239
Score = 27.5 bits (61), Expect = 3.9
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 177 TGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRI-----DVKIVQSN 231
T + +GI+ + +L S R +E + D+ +
Sbjct: 157 TEYDGEDIGIFILSDSIFEDTYELL-----VERSEYDYREVEKEAGLPFTEVDIHVDGLF 211
Query: 232 AMSVDTTNDLEKVRTLIPHDHHKG 255
M VDT DLE+ R + + KG
Sbjct: 212 WMEVDTPEDLERARKYLVPNIKKG 235
>gnl|CDD|146356 pfam03678, Adeno_hexon_C, Hexon, adenovirus major coat protein,
C-terminal domain. Hexon is the major coat protein from
adenovirus type 2. Hexon forms a homo-trimer. The 240
copies of the hexon trimer are organized so that 12 lie
on each of the 20 facets. The central 9 hexons in a
facet are cemented together by 12 copies of polypeptide
IX. The penton complex, formed by the peripentonal
hexons and base hexon (holding in place a fibre), lie at
each of the 12 vertices. The N and C-terminal domains
adopt the same PNGase F-like fold although they are
significantly different in length.
Length = 236
Score = 27.3 bits (61), Expect = 4.7
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 147 PNIVKIVVASPSEN-GCFRALYFTRTKT 173
N + + PS N FR FTR K
Sbjct: 23 ANSTNVPINIPSRNWAAFRGWSFTRLKA 50
>gnl|CDD|32265 COG2082, CobH, Precorrin isomerase [Coenzyme metabolism].
Length = 210
Score = 27.1 bits (60), Expect = 5.0
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 14 IPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAG 69
I A +++ I+ D+N M+ R R + VI VDD ++ E+ + G
Sbjct: 59 IEAGREALKAGCPIVVDVN---MVAAGITRRRLPALNPVICYVDDPRVAELAKEEG 111
>gnl|CDD|30496 COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component
I [Amino acid transport and metabolism / Coenzyme
metabolism].
Length = 462
Score = 26.9 bits (59), Expect = 5.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 212 EQLRALEARMRIDVKIVQSNAMSVDTT-NDLEKV 244
E+ ALEA + D K + M VD NDL +V
Sbjct: 287 EEDEALEAELLNDEKERAEHLMLVDLARNDLGRV 320
>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU. The
N-terminal domain of N-Acetylglucosamine-1-phosphate
uridyltransferase (GlmU). GlmU is an essential bacterial
enzyme with both an acetyltransferase and an
uridyltransferase activity which have been mapped to the
C-terminal and N-terminal domains, respectively. This
family represents the N-terminal uridyltransferase. GlmU
performs the last two steps in the synthesis of
UDP-N-acetylglucosamine (UDP-GlcNAc), which is an
essential precursor in both the peptidoglycan and the
lipopolysaccharide metabolic pathways in Gram-positive
and Gram-negative bacteria, respectively.
Length = 229
Score = 26.3 bits (59), Expect = 8.2
Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 40/156 (25%)
Query: 21 MRFPK-KILADINGLPMILHTAIR-ARKANIGRVIV-----------AVDDTKINEIVLQ 67
M+ K+L + G PM+ H + AR R++V A+ + + E VLQ
Sbjct: 12 MKSDLPKVLHPLAGKPMLEH-VLDAARALGPDRIVVVVGHGAEQVKKALANPNV-EFVLQ 69
Query: 68 AGFESVMTHTSHQSGS-DRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQN 126
Q G+ + +AL + + +++ D+P I PE L +L +
Sbjct: 70 ----------EEQLGTGHAVKQALPALKDFEGDVLVLY--GDVPLITPETLQRLLEAHRE 117
Query: 127 PIVDIGTLGTRIHGSTDP---------DDPNIVKIV 153
D+ L + DP + +++IV
Sbjct: 118 AGADVTVLTAEL---EDPTGYGRIIRDGNGKVLRIV 150
>gnl|CDD|144176 pfam00483, NTP_transferase, Nucleotidyl transferase. This family
includes a wide range of enzymes which transfer
nucleotides onto phosphosugars.
Length = 247
Score = 26.4 bits (59), Expect = 8.5
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 20 SMRFPKKILADINGLPMILHTAIRARKANIGRVIVAV 56
+ K ++ ++ PMI +T R A I IV
Sbjct: 17 TRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVIC 53
>gnl|CDD|38856 KOG3651, KOG3651, KOG3651, Protein kinase C, alpha binding protein
[Signal transduction mechanisms].
Length = 429
Score = 26.6 bits (58), Expect = 8.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 181 YQHLGIYAYRREALKRFTQLSPSVLEQRESLEQ 213
Y++ I R+EA RF ++ VLE+ E L+Q
Sbjct: 277 YEYRLILRCRQEARARFMKMRDDVLEKMELLDQ 309
>gnl|CDD|153378 cd07366, 3MGA_Dioxygenase, Subunit B of the Class III Extradiol
ring-cleavage dioxygenase, 3-O-Methylgallate
Dioxygenase, which catalyzes the oxidization and
subsequent ring-opening of 3-O-Methylgallate.
3-O-Methylgallate Dioxygenase catalyzes the oxidization
and subsequent ring-opening of 3-O-Methylgallate (3MGA)
between carbons 2 and 3. 3-O-Methylgallate Dioxygenase
is a key enzyme in the syringate degradation pathway, in
which the syringate is first converted to
3-O-Methylgallate by O-demethylase. This enzyme is a
member of the class III extradiol dioxygenase family, a
group of enzymes which uses a non-heme Fe(II) to cleave
aromatic rings between a hydroxylated carbon and an
adjacent non-hydroxylated carbon. LigAB-like enzymes are
usually composed of two subunits, designated A and B,
which form a tetramer composed of two copies of each
subunit. This model represents the catalytic subunit, B.
Length = 328
Score = 26.2 bits (58), Expect = 9.3
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 199 QLSPSVLEQRE-----SLEQLRALEARMRIDVKIVQSN 231
Q++P + R +L++L RIDV ++ +
Sbjct: 58 QITPEEMAARYARCQAALDRLADFIRAARIDVAVIVGD 95
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.136 0.383
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,165,666
Number of extensions: 166292
Number of successful extensions: 474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 458
Number of HSP's successfully gapped: 42
Length of query: 268
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 176
Effective length of database: 4,275,709
Effective search space: 752524784
Effective search space used: 752524784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)