RPSBLAST alignment of GI: 254780765 and protein with PDBid: 1i52
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP), isoprenoid biosynthesys; HET: CTP; 1.50A {Escherichia coli K12} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 1h3m_A Length = 236
Score = 43.0 bits (100), Expect = 7e-05
Identities = 32/259 (12%), Positives = 70/259 (27%), Gaps = 31/259 (11%)
Query: 1 MKDQHIKEKVLVIIPARLNSMRFPKKI---LADINGLPMILHTAIRARKANIGRVIVAVD 57
M H+ V ++PA R + I ++ H+ + +V
Sbjct: 1 MATTHLD--VCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAI 58
Query: 58 DTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEIL 117
+ + T G +R L + + +Q ++ A P + + L
Sbjct: 59 SPGDSRFAQLP-LANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDL 117
Query: 118 ASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGT 177
A + + S I+ V + T +
Sbjct: 118 ARL-----------------LALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRN-- 158
Query: 178 GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQ--SNAMSV 235
+ L + RE L L + ++ + ++V+ ++ + V
Sbjct: 159 -GLWHALTPQFFPRELLH---DCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKV 214
Query: 236 DTTNDLEKVRTLIPHDHHK 254
DL + H+
Sbjct: 215 TRPEDLALAEFYLTRTIHQ 233