RPSBLAST alignment of GI: 254780765 and protein with PDBid: 1vgw

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 34/253 (13%), Positives = 67/253 (26%), Gaps = 37/253 (14%)

Query: 6   IKEKVLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKANIGRVIVAV-----D 57
           +K K + +IPA    +RF     K   +I    ++ H      +     + V V      
Sbjct: 3   LKRKNIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDT 62

Query: 58  DTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEIL 117
                +              +           L       ++  I+   A    +  E L
Sbjct: 63  FADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEAL 122

Query: 118 ASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGT 177
           A ++    N                  +   I          +G ++A      +     
Sbjct: 123 ARLIEQAGNAAEGGILAVPVADTLKRAESGQISAT----VDRSGLWQAQTPQLFQA---- 174

Query: 178 GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQ--SNAMSV 235
                 L   A   E L   T  + S +E             ++ +   ++Q  +  + +
Sbjct: 175 -----GLLHRALAAENLGGITDEA-SAVE-------------KLGVRPLLIQGDARNLKL 215

Query: 236 DTTNDLEKVRTLI 248
               D   VR L+
Sbjct: 216 TQPQDAYIVRLLL 228