RPSBLAST alignment of GI: 254780765 and protein with PDBid: 1vic
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* Length = 262
Score = 142 bits (359), Expect = 6e-35
Identities = 87/251 (34%), Positives = 132/251 (52%), Gaps = 12/251 (4%)
Query: 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQA 68
VIIPAR S R P K LADI G PMI H +A ++ RVI+A D+ + ++
Sbjct: 2 SFTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVADVAKSF 61
Query: 69 GFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPI 128
G E MT +H SG++R+ E + + ++IIVN+Q D P I P I+ V L
Sbjct: 62 GAEVCMTSVNHNSGTERLAEVVEKLA-IPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFN 120
Query: 129 VDIGTLGTRIHGSTDPDDPNIVKIVVA----------SPSENGCFRALYFTRTKTPHGTG 178
V++ +L +IH + + +PN VK++ S + + + +
Sbjct: 121 VNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSD 180
Query: 179 PFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSN-AMSVDT 237
+ +H+GIYAYR +K++ Q +P+ LE E LEQLR L RI V++ + A+ VDT
Sbjct: 181 AYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDT 240
Query: 238 TNDLEKVRTLI 248
DLEKVR ++
Sbjct: 241 AEDLEKVRAIL 251