RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780765|ref|YP_003065178.1| 3-deoxy-manno-octulosonate
cytidylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(268 letters)
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for
structural genomics of infectious diseases; 1.75A
{Vibrio cholerae o1 biovar el tor}
Length = 252
Score = 166 bits (421), Expect = 4e-42
Identities = 88/252 (34%), Positives = 123/252 (48%), Gaps = 18/252 (7%)
Query: 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQA 68
V+IPAR S R P K LADI G PMI +A +A RVI+A DD ++ + V
Sbjct: 2 SFTVVIPARYQSTRLPGKPLADIGGKPMIQWVYEQAMQAGADRVIIATDDERVEQAVQAF 61
Query: 69 GFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPI 128
G MT +HQSG++R+ E + + I+VN+Q D P I P I+ V L
Sbjct: 62 GGVVCMTSPNHQSGTERLAEVVAKMAIPAD-HIVVNVQGDEPLIPPAIIRQVADNLAACS 120
Query: 129 VDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHG-----------T 177
+ TL I + +PN VK++ + ALYF+R P
Sbjct: 121 APMATLAVEIEDEAEVFNPNAVKVIT-----DKSGYALYFSRATIPWDRDNFAKADKAIV 175
Query: 178 GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKI-VQSNAMSVD 236
P +H+GIYAYR + + PS LE+ E LEQLR L +I V + +++ VD
Sbjct: 176 QPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVD 235
Query: 237 TTNDLEKVRTLI 248
T DLE VR ++
Sbjct: 236 TPEDLEVVRRIV 247
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase;
nucleotidyltransferase, CMP-KDO synthetase, nucleoside
monophosphate glycosides; 1.83A {Escherichia coli} SCOP:
c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A*
1h7h_A* 1h7t_A*
Length = 245
Score = 157 bits (398), Expect = 2e-39
Identities = 82/241 (34%), Positives = 129/241 (53%), Gaps = 6/241 (2%)
Query: 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKA-NIGRVIVAVDDTKINEIVLQ 67
K +++IPAR S R P K L DI G PMI H RA + + V VA DD ++ + V
Sbjct: 2 KAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQA 61
Query: 68 AGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNP 127
G +++MT H+SG+DR+ E ++ +++D I +N+Q D P I P + ++L +++
Sbjct: 62 FGGKAIMTRNDHESGTDRLVEVMHKVEAD----IYINLQGDEPMIRPRDVETLLQGMRDD 117
Query: 128 IVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIY 187
+ + +P+ VK+VV + + F + + +H+GIY
Sbjct: 118 PALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAE-KARYLKHVGIY 176
Query: 188 AYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDLEKVRTL 247
AYRR+ L+ ++QL S+ EQ ESLEQLR + A + I V + VDT LEKVR L
Sbjct: 177 AYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRAL 236
Query: 248 I 248
+
Sbjct: 237 M 237
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural
genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13
PDB: 1vh3_A 3duv_A*
Length = 262
Score = 142 bits (359), Expect = 6e-35
Identities = 87/251 (34%), Positives = 132/251 (52%), Gaps = 12/251 (4%)
Query: 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQA 68
VIIPAR S R P K LADI G PMI H +A ++ RVI+A D+ + ++
Sbjct: 2 SFTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSGASRVIIATDNENVADVAKSF 61
Query: 69 GFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPI 128
G E MT +H SG++R+ E + + ++IIVN+Q D P I P I+ V L
Sbjct: 62 GAEVCMTSVNHNSGTERLAEVVEKLA-IPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFN 120
Query: 129 VDIGTLGTRIHGSTDPDDPNIVKIVVA----------SPSENGCFRALYFTRTKTPHGTG 178
V++ +L +IH + + +PN VK++ S + + + +
Sbjct: 121 VNMASLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSD 180
Query: 179 PFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSN-AMSVDT 237
+ +H+GIYAYR +K++ Q +P+ LE E LEQLR L RI V++ + A+ VDT
Sbjct: 181 AYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVELAKEVPAVGVDT 240
Query: 238 TNDLEKVRTLI 248
DLEKVR ++
Sbjct: 241 AEDLEKVRAIL 251
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase
KDO complex, cytoplasm, lipopolysaccharide biosynthesis,
magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB:
3k8e_C 1vh1_A 3jtj_A*
Length = 264
Score = 141 bits (355), Expect = 2e-34
Identities = 91/247 (36%), Positives = 119/247 (48%), Gaps = 8/247 (3%)
Query: 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQA 68
+VIIPAR S R P K L DING PMI+H RAR++ R+IVA D + V A
Sbjct: 18 SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAA 77
Query: 69 GFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPI 128
G E MT HQSG++R+ E + +IVN+Q D P I I+ V L
Sbjct: 78 GGEVCMTRADHQSGTERLAEV-VEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQ 136
Query: 129 VDIGTLGTRIHGSTDPDDPNIVKIVVAS------PSENGCFRALYFTRTKTPHGTGPFYQ 182
V + TL IH + + +PN VK+V+ + S F +
Sbjct: 137 VGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLR 196
Query: 183 HLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSN-AMSVDTTNDL 241
HLGIY YR ++R+ PS LE E LEQLR L +I V + Q VDT DL
Sbjct: 197 HLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDL 256
Query: 242 EKVRTLI 248
E+VR +
Sbjct: 257 ERVRAEM 263
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.90A {Thermus thermophilus HB8}
SCOP: c.68.1.19
Length = 232
Score = 113 bits (283), Expect = 4e-26
Identities = 32/246 (13%), Positives = 63/246 (25%), Gaps = 30/246 (12%)
Query: 9 KVLVIIPA-----RLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINE 63
+ I+ A K L G PM+ A + V V + +
Sbjct: 2 RPSAIVLAGGKEAWAERFGVGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGENPGLVPA 61
Query: 64 IVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLP 123
+T + + +AL ++ ++ DIP++ E + VL
Sbjct: 62 PA--------LTLPDRGGLLENLEQALEHVEGR-----VLVATGDIPHLTEEAVRFVLDK 108
Query: 124 LQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQH 183
+ + + + P + L P +
Sbjct: 109 APEAALVYPIV---PKEAVEARFPRTKRTYARLREGTFTGGNLLLLDKSLFRKALPLARR 165
Query: 184 LGIYAYRREALKRFTQLSPSV------LEQRESLEQLRALEARMRIDVKIVQSN--AMSV 235
+ R AL R + L E + + + + + + V
Sbjct: 166 VVALRKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILG-VEARALVTPYPEVGVDV 224
Query: 236 DTTNDL 241
D DL
Sbjct: 225 DREEDL 230
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer,
alpha-beta-alpha, transferase; 2.00A {Neisseria
meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Length = 228
Score = 89.2 bits (220), Expect = 9e-19
Identities = 43/251 (17%), Positives = 79/251 (31%), Gaps = 34/251 (13%)
Query: 7 KEKVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIV 65
+++ + +I AR NS P K L +NG+ ++ HT A + R+IV+ D I E
Sbjct: 2 EKQNIAVILARQNSKGLPLKNLRKMNGISLLGHTINAAISSKCFDRIIVSTDGGLIAEEA 61
Query: 66 LQAGFESVMTH----TSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVL 121
G E V+ + S + AL I S+ S + +Q P +
Sbjct: 62 KNFGVEVVLRPAELASDTASSISGVIHALETIGSN--SGTVTLLQPTSPLRTGAHIREAF 119
Query: 122 LPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGP-- 179
I + P + + + + + P P
Sbjct: 120 SLFDEKIKGSVVSACPME-----HHPLKTLLQIN---NGEYAPMRHLSDLEQPRQQLPQA 171
Query: 180 FYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTN 239
F + IY + L + +++ +DT
Sbjct: 172 FRPNGAIYINDTAS-----------------LIANNCFFIAPTKLYIMSHQDSIDIDTEL 214
Query: 240 DLEKVRTLIPH 250
DL++ ++ H
Sbjct: 215 DLQQAENILNH 225
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase;
CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC,
sialic acid, glycosylation; HET: NCC; 2.80A {Mus
musculus} SCOP: c.68.1.13
Length = 229
Score = 78.4 bits (192), Expect = 2e-15
Identities = 39/253 (15%), Positives = 78/253 (30%), Gaps = 29/253 (11%)
Query: 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKAN-IGRVIVAVDDTKINEIVLQ 67
+ ++ AR S P K + + G+P+I A A V V+ D +I + Q
Sbjct: 3 HLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWVSTDHDEIENVAKQ 62
Query: 68 AGFESVMT-HTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQN 126
G + + + S + + ++ + I+ N+QA P + P L V ++
Sbjct: 63 FGAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIRE 122
Query: 127 PIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGI 186
D R H + V+ V + N R + G
Sbjct: 123 EGYDSVFSVVRRHQFRWSEIQKGVREVTEPLNLNPAKRPRRQDWDGELYENG------SF 176
Query: 187 YAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDLEKVRT 246
Y +R ++ + ++ +++ +D D
Sbjct: 177 YFAKRHLIEMGYLQGGKM------------------AYYEMRAEHSVDIDVDIDWPIAEQ 218
Query: 247 LIPHDHHKGLYKK 259
+ G + K
Sbjct: 219 RV---LRFGYFGK 228
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; 2.80A {Sulfolobus solfataricus}
Length = 197
Score = 50.2 bits (119), Expect = 5e-07
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 7/114 (6%)
Query: 9 KVLVIIPARLNSMRFPK-KILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQ 67
+ VII A RF K+LA I+ P+I+ T ++ + E++
Sbjct: 2 NIGVIILAAGEGKRFGGDKLLAKIDNTPIIMRTIRIYGDLEKIIIVGKYVN----EMLPL 57
Query: 68 AGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVL 121
+ V+ + G + K ++ D+P + E + ++
Sbjct: 58 LMDQIVIYNPFWNEG--ISTSLKLGLRFFKDYDAVLVALGDMPFVTKEDVNKII 109
>3okr_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TB structural
genomics consortium, TBSGC, tryptophan synthes
2-C-methyl-D-erythritol 4-phosphate cytidyltransferase;
2.40A {Mycobacterium tuberculosis}
Length = 231
Score = 48.9 bits (116), Expect = 1e-06
Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 7 KEKVLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKANIGRVIVAVDDTKINE 63
+V+ I+PA + R K ++G +I + + +V +
Sbjct: 5 AGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTD 64
Query: 64 IVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLP 123
Q M + +D + AL ++ + + ++ A P ++A V+
Sbjct: 65 EARQILGHRAMIVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEA 124
Query: 124 LQN 126
L++
Sbjct: 125 LRD 127
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A
{Mycobacterium SP}
Length = 199
Score = 44.6 bits (105), Expect = 2e-05
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 6 IKEKVLVIIPARLNSMRFPK-KILADINGLPMILHTAIRARKANIGRVIVAV--DDTKIN 62
++ +V ++ A S R K L + ++ T AR+ ++IV + ++
Sbjct: 2 LRSRVTGVVLAAGYSRRLGTPKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEVL 61
Query: 63 EIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVL 121
E V G + V+ + S + AL +D + ++ M D P I +AS++
Sbjct: 62 EKVELDGLDIVLVDDAGLGCSSSLKSALTWVDPTAEGIVL--MLGDQPGITASAVASLI 118
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 43.4 bits (102), Expect = 5e-05
Identities = 51/309 (16%), Positives = 90/309 (29%), Gaps = 122/309 (39%)
Query: 13 IIPARLNSMRFPKKILA--DING----LPMILHTAIRARKANIGRVI------VAVDDTK 60
++ L F L DI+ L T + K +I +
Sbjct: 83 VLNLCLTE--FENCYLEGNDIHALAAKLLQENDTTLVKTK----ELIKNYITARIMAKRP 136
Query: 61 INEIVLQAGFESVMTHTSH-------QSGSDRIFEAL------------NIIDS--DKKS 99
++ A F +V + Q +D FE L ++I + S
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 100 QIIVNMQA---------DI------PNIEPEI--LAS--VLLPL----Q----------- 125
++I +I P+ P+ L S + PL Q
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 126 --NPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPS------ENG--CFRALYFT--RTKT 173
P G L + + G+T + + +A + L+F R
Sbjct: 257 GFTP----GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC-- 310
Query: 174 PHGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQ----------LRALEARMRI 223
Y+ AY T L PS+LE +SLE + L + ++
Sbjct: 311 -------YE-----AYPN------TSLPPSILE--DSLENNEGVPSPMLSISNLT-QEQV 349
Query: 224 DVKIVQSNA 232
+ ++N+
Sbjct: 350 QDYVNKTNS 358
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase;
cytidylyltransferase, deoxyxylulose-5-phosphate pathway
(DXP), isoprenoid biosynthesys; HET: CTP; 1.50A
{Escherichia coli K12} SCOP: c.68.1.13 PDB: 1ini_A*
1inj_A 1vgt_A 1vgu_A 1h3m_A
Length = 236
Score = 43.0 bits (100), Expect = 7e-05
Identities = 32/259 (12%), Positives = 70/259 (27%), Gaps = 31/259 (11%)
Query: 1 MKDQHIKEKVLVIIPARLNSMRFPKKI---LADINGLPMILHTAIRARKANIGRVIVAVD 57
M H+ V ++PA R + I ++ H+ + +V
Sbjct: 1 MATTHLD--VCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAI 58
Query: 58 DTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEIL 117
+ + T G +R L + + +Q ++ A P + + L
Sbjct: 59 SPGDSRFAQLP-LANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDL 117
Query: 118 ASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGT 177
A + + S I+ V + T +
Sbjct: 118 ARL-----------------LALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRN-- 158
Query: 178 GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQ--SNAMSV 235
+ L + RE L L + ++ + ++V+ ++ + V
Sbjct: 159 -GLWHALTPQFFPRELLH---DCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKV 214
Query: 236 DTTNDLEKVRTLIPHDHHK 254
DL + H+
Sbjct: 215 TRPEDLALAEFYLTRTIHQ 233
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium
tuberculosis H37RV} PDB: 2we9_A
Length = 197
Score = 42.3 bits (99), Expect = 1e-04
Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 5/118 (4%)
Query: 7 KEKVLVIIPARLNSMRF-PKKILADINGLPMILHTAIRARKANIGRVIVAV--DDTKINE 63
++ ++ A S R K L ++ T AR+A ++I+ + + +
Sbjct: 3 ATQITGVVLAAGRSNRLGTPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVRA 62
Query: 64 IVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVL 121
+ G + V+ + + + AL + ++ M D P + P L ++
Sbjct: 63 AMALDGTDVVVVEDVERGCAASLRVALARVHPRATGIVL--MLGDQPQVAPATLRRII 118
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2; structural genomics, PSI-2, protein structure
initiative; 2.30A {Listeria monocytogenes str}
Length = 246
Score = 41.4 bits (96), Expect = 2e-04
Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 14/126 (11%)
Query: 9 KVLVIIPA-----RLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINE 63
+ I A R+ ++ PK +NG P+I+HT + I+ +
Sbjct: 3 LIYAQILAGGKGTRMGNVSMPK-QFLPLNGKPIIVHTVEKFILNTRFDKILISSPKEWMN 61
Query: 64 IVLQA--------GFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPE 115
+ + IIV A P +
Sbjct: 62 HAEDNIKKYISDDRIVVIEGGEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHR 121
Query: 116 ILASVL 121
I+ +
Sbjct: 122 IIEENI 127
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A;
molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A
{Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A*
1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Length = 201
Score = 40.2 bits (93), Expect = 5e-04
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 8/130 (6%)
Query: 13 IIPARLNSMRF--PKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGF 70
++ A + R K L ++NG P+ H A V+ A EI +G
Sbjct: 10 VVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRH---QEIYQASGL 66
Query: 71 ESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLPLQNPIVD 130
+ + + G ++ ++ + + D P I P++ A + ++ V
Sbjct: 67 KVIEDSLADYPGPLAGMLSVMQQEAG---EWFLFCPCDTPYIPPDLAARLNHQRKDAPVV 123
Query: 131 IGTLGTRIHG 140
G R H
Sbjct: 124 WVHDGERDHP 133
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; structural
genomics, transferase; 2.35A {Neisseria gonorrhoeae}
SCOP: c.68.1.13 PDB: 1vgz_A
Length = 231
Score = 38.5 bits (88), Expect = 0.002
Identities = 34/253 (13%), Positives = 67/253 (26%), Gaps = 37/253 (14%)
Query: 6 IKEKVLVIIPARLNSMRFPK---KILADINGLPMILHTAIRARKANIGRVIVAV-----D 57
+K K + +IPA +RF K +I ++ H + + V V
Sbjct: 3 LKRKNIALIPAAGIGVRFGADKPKQYVEIGSKTVLEHVLGIFERHEAVDLTVVVVSPEDT 62
Query: 58 DTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEIL 117
+ + L ++ I+ A + E L
Sbjct: 63 FADKVQTAFPQVRVWKNGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEAL 122
Query: 118 ASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGT 177
A ++ N + I +G ++A +
Sbjct: 123 ARLIEQAGNAAEGGILAVPVADTLKRAESGQISAT----VDRSGLWQAQTPQLFQA---- 174
Query: 178 GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQ--SNAMSV 235
L A E L T + S +E ++ + ++Q + + +
Sbjct: 175 -----GLLHRALAAENLGGITDEA-SAVE-------------KLGVRPLLIQGDARNLKL 215
Query: 236 DTTNDLEKVRTLI 248
D VR L+
Sbjct: 216 TQPQDAYIVRLLL 228
>1w77_A 2C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
plantherbicide, non-mevalonate pathway, isoprenoid; HET:
C5P; 2.00A {Arabidopsis thaliana} SCOP: c.68.1.13
Length = 228
Score = 37.7 bits (86), Expect = 0.003
Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 3/112 (2%)
Query: 6 IKEKVLVIIPARLNSMRFPKKI---LADINGLPMILHTAIRARKANIGRVIVAVDDTKIN 62
+++ V VI+ A R + + G P+ L++ + + IV V D
Sbjct: 1 MEKSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFR 60
Query: 63 EIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEP 114
+I + + G +R + + + +V + +
Sbjct: 61 DIFEEYEESIDVDLRFAIPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVN 112
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
TTHA0171, ISPD_THET8, ISPD, structural genomics PSI;
2.20A {Thermus thermophilus HB8}
Length = 236
Score = 36.9 bits (84), Expect = 0.005
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 1 MKDQHIKEKVLVIIPARLNSMRF--PKKILADINGLPMILHTAIRARKANIGRVIVAVDD 58
+ D +V V+IPA N +R K + G ++ T R A V +
Sbjct: 17 IDDDDKHMEVSVLIPAAGNGLRLGRGPKAFLQVGGRTLLEWTLAAFRDAAEVLVALPPGA 76
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;
nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A
{Streptococcus pneumoniae} PDB: 2vsi_A*
Length = 236
Score = 35.8 bits (81), Expect = 0.009
Identities = 31/249 (12%), Positives = 74/249 (29%), Gaps = 28/249 (11%)
Query: 10 VLVIIPARLNSMRFPK----KILADINGLPMILHTAIRARKANIGRVIVAV----DDTKI 61
+ I A R K ++ P+++HT + IV +
Sbjct: 3 IYAGILAGGTGTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHA 62
Query: 62 NEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVL 121
++V + + G+DR NII++ + + + + ++
Sbjct: 63 EDLVDKYLPLYKERIIITKGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLR 122
Query: 122 LPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFY 181
+ I + + V + T P+ +
Sbjct: 123 M---------------IQDNIQLAQNHDAVDTVVEAVDTIVESTNGQFITDIPNRAHLYQ 167
Query: 182 QHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQ--SNAMSVDTTN 239
++ + + LS E++E L + DV + + + + + T
Sbjct: 168 GQTPQTFRCKDFMDLYGSLS---DEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVT 224
Query: 240 DLEKVRTLI 248
DL+ +++I
Sbjct: 225 DLKIAKSMI 233
>1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel
beta-helix, transferase; HET: COA UD1; 2.10A
{Escherichia coli} SCOP: b.81.1.4 c.68.1.5 PDB: 2oi5_A*
2oi6_A* 2oi7_A* 3fww_A 1fxj_A* 1fwy_A*
Length = 456
Score = 34.3 bits (77), Expect = 0.033
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 6 IKEKVLVIIPA-----RLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAV 56
+ + V+I A R+ S K+L + G M+ H A + V +
Sbjct: 2 LNNAMSVVILAAGKGTRMYSDL--PKVLHTLAGKAMVQHVIDAANELGAAHVHLVY 55
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TM1393,
structural genomics, JCSG, joint center for structural
genomics, PSI; HET: CTP; 2.67A {Thermotoga maritima}
SCOP: c.68.1.13
Length = 234
Score = 33.9 bits (76), Expect = 0.035
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 13 IIPARLNSMRFPKKI---LADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIV--LQ 67
I+ A R + + +I G + + K+ +V V + E+V
Sbjct: 17 ILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRV 76
Query: 68 AGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNM 105
+ + + S + AL ++ S ++V+
Sbjct: 77 FHEKVLGIVEGGDTRSQSVRSALEFLEKFSPSYVLVHD 114
>3dk5_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann-like fold, LEFT-handed-beta-helix, trimer,
cell shape; 2.23A {Mycobacterium tuberculosis} PDB:
3d8v_A 3d98_A* 3dj4_A 3foq_A 2qkx_A*
Length = 495
Score = 33.9 bits (76), Expect = 0.036
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 5 HIKEKVLVIIPA-----RLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAV 56
V++ A R+ S K+L + G M+ H K R+IV +
Sbjct: 2 TFPGDTAVLVLAAGPGTRMRSDT--PKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVL 56
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Length = 329
Score = 33.7 bits (76), Expect = 0.042
Identities = 29/194 (14%), Positives = 51/194 (26%), Gaps = 19/194 (9%)
Query: 9 KVLVIIPARLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDD-----TKINE 63
+ V++PA + ++ +I + ++ +D T+I
Sbjct: 49 TISVVLPAL-DEEDTIGSVID-----------SISPLVDGLVDELIVLDSGSTDDTEIRA 96
Query: 64 IVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILASVLLP 123
+ A S EAL + + I+V + +D+ N P + ++ P
Sbjct: 97 VAAGARVVSREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGP 156
Query: 124 LQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQH 183
L D R L P
Sbjct: 157 LLTGDGVHLVKSFYRRPLNVGDAGGGAGATGGGRVTELVARPL--LAALRPELGCILQPL 214
Query: 184 LGIYAYRREALKRF 197
G YA RE L
Sbjct: 215 GGEYAATRELLTSV 228
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids,
nonmevalonate, transferase; HET: C GPP; 2.3A
{Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB:
1w57_A*
Length = 371
Score = 33.2 bits (75), Expect = 0.056
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 9 KVLVIIPARLNSMRF---PKKILADINGLPMILHTAIRARKAN-IGRVIVAVDD 58
++ +I+ A NS RF KK + P+ L+ +++V +
Sbjct: 3 EMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSN 56
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase;
acetyltransferase, bifunctional, crystallography, drug
design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae}
SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 1g97_A*
1g95_A*
Length = 468
Score = 32.4 bits (72), Expect = 0.11
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 11 LVIIPA-----RLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAV 56
II A R+ S K+L + G+ M+ H + + V
Sbjct: 13 FAIILAAGKGTRMKSDL--PKVLHKVAGISMLEHVFRSVGAIQPEKTVTVV 61
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure,
CTP:phosphocholine cytidylyltransferase; 1.50A
{Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Length = 254
Score = 32.2 bits (72), Expect = 0.12
Identities = 32/260 (12%), Positives = 79/260 (30%), Gaps = 39/260 (15%)
Query: 5 HIKE-KVLVIIPA-----RLNSMRFPK-KILADINGLPMILHTAIRARKANIGRVIVAVD 57
H+KE +V II A RL + K L +N P+I + ++ I +I+ V
Sbjct: 20 HMKEIRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVG 79
Query: 58 DTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEIL 117
K L+ + + + + + + + S +I N+ L
Sbjct: 80 YLKEQFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELANSYVIDADNYLFKNMFRNDL 139
Query: 118 ASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGT 177
++ + D V+ ++
Sbjct: 140 T------RSTYFSVYREDCTNEWFLVYGDDYKVQDIIVDSKAG----------------- 176
Query: 178 GPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQ-----LRALEARMRIDVKIVQSNA 232
G+ + ++ E ++ ++ + + V+ ++ N+
Sbjct: 177 ---RILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNS 233
Query: 233 -MSVDTTNDLEKVRTLIPHD 251
+D+ D K+ ++ ++
Sbjct: 234 IYEIDSVQDYRKLEEILKNE 253
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape,
transferase, peptidoglycan synthesis, associative
mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A*
2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A*
Length = 456
Score = 31.5 bits (70), Expect = 0.20
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 6 IKEKVLVIIPA-----RLNSMRFPKKILADINGLPMILHTAIRARKANIGRVIVAV 56
K+ + +I A R+ S K+L I G PM+ H A + + +
Sbjct: 2 TKKALSAVILAAGKGTRMYSDL--PKVLHTIAGKPMVKHVIDTAHQLGSENIHLIY 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.28
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 191 REALKRFTQLSPSV-LEQRESLEQLRALEARM 221
++ALK+ L S+ L +S L A++A M
Sbjct: 19 KQALKK---LQASLKLYADDSAPAL-AIKATM 46
Score = 30.0 bits (66), Expect = 0.53
Identities = 7/39 (17%), Positives = 22/39 (56%), Gaps = 12/39 (30%)
Query: 207 QRESLEQLRALEARMRI---DVKIVQSNAMSVDTTNDLE 242
++++L++ L+A +++ D + A+++ T +E
Sbjct: 18 EKQALKK---LQASLKLYADD----SAPALAIKAT--ME 47
>2e8b_A Probable molybdopterin-guanine dinucleotide biosynthesis protein A;
putative protein, molybdenum cofactor, structural
genomics, NPPSFA; 1.61A {Aquifex aeolicus VF5}
Length = 201
Score = 30.7 bits (68), Expect = 0.35
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 9/108 (8%)
Query: 12 VIIPARLNSMRFPK-KILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGF 70
+ A S RF + K+L +I G +I A+ IVA D +
Sbjct: 17 CYVLAGGKSKRFGEDKLLYEIKGKKVIERVYETAKSVFKEVYIVAKDR--------EKFS 68
Query: 71 ESVMTHTSHQSGSDRIFEALNIIDSDKKSQIIVNMQADIPNIEPEILA 118
+ L K + + + D+P ++ E +
Sbjct: 69 FLNAPVVLDEFEESASIIGLYTALKHAKEENVFVLSGDLPLMKKETVL 116
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose,
nucleotidyltransferase, pyrophosphorylase, allostery;
HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6
PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A*
1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B*
1h5t_B* 1iim_A* 1iin_A* 1mp5_A* 1mp3_A* 1mp4_A*
Length = 293
Score = 29.3 bits (65), Expect = 0.86
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 26 KILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEI 64
K L + PMI + A I +++
Sbjct: 25 KQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPRF 63
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.4 bits (65), Expect = 0.96
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 22/93 (23%)
Query: 27 ILADING----LPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTH-TSHQS 81
++AD+NG +P + + RK V+ +++ + V E+ + H + +
Sbjct: 723 VMADLNGGLQFVPELKEFTAKLRKE-------LVETSEVRKAV---SIETALEHKVVNGN 772
Query: 82 GSDRIFEALNIIDSDKKSQIIVNMQADIPNIEP 114
+D + + I Q N+Q D P ++P
Sbjct: 773 SADAAYAQVEI-------QPRANIQLDFPELKP 798
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.1 bits (64), Expect = 1.2
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 8/36 (22%)
Query: 186 IYAYRREALKRFTQL--SPSVLEQ--RES----LEQ 213
I +R E KR +L + V+EQ RE LE+
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
Score = 28.7 bits (63), Expect = 1.4
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 20/56 (35%)
Query: 196 RFTQLSPSVL----EQRESLEQLRA----LEARMRIDVKIVQSNAMSVDTTNDLEK 243
R TQ S+ EQR+ L++L A +E R K DLE+
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK------------KDLEE 122
>2ggo_A 401AA long hypothetical glucose-1-phosphate
thymidylyltransferase; beta barrel; 1.80A {Sulfolobus
tokodaii} PDB: 2ggq_A*
Length = 401
Score = 28.0 bits (61), Expect = 2.0
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 12 VIIPA-----RLNSMRFPK-KILADINGLPMILHTAIRARKANIGRVIVAV 56
I A RL + + K I P+I + RK I + V V
Sbjct: 3 AFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIV 53
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure,
structural genomics, protein structure initiative; NMR
{Corynebacterium glutamicum} SCOP: a.4.1.19
Length = 97
Score = 27.5 bits (61), Expect = 3.0
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 175 HGTGPFYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKI 227
G I Y + T S +V E + + QL+ A R +
Sbjct: 33 LGINRVTLKNWIIKYGSNHNVQGTTPSAAVSEAEQ-IRQLKKENALQRARTRH 84
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation,
crystallography, phosphorylation, sigma factor,
sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP:
c.13.2.1 PDB: 1h4z_A 1h4y_A
Length = 117
Score = 27.6 bits (61), Expect = 3.0
Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 21 MRFPKKILADINGLPMILHTAIRARKANIGRVIVAVDDTKINEIVLQAGFESVMTHTSHQ 80
F + D +G+ ++L +++ + ++ +G M + +
Sbjct: 47 WNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSP-TMRKVFQFSGLGPWMMDATEE 105
Query: 81 SGSDRIFEALN 91
DR+ +N
Sbjct: 106 EAIDRVRGIVN 116
>2iny_A Hexon protein, late protein 2; avian adenovirus, CELO, major coat
protein, crystal packing, nanotechnology, viral jelly
roll, viral protein; 3.90A {Fowl adenovirus 1}
Length = 942
Score = 27.3 bits (61), Expect = 3.3
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 147 PNIVKIVVASPSEN-GCFRALYFTRTKT 173
+ + P+ R FTR K
Sbjct: 628 AGSTLLTINIPARTWEGMRGWSFTRLKA 655
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A
{Helicobacter pylori} PDB: 3juj_A*
Length = 281
Score = 27.3 bits (60), Expect = 3.6
Identities = 21/222 (9%), Positives = 55/222 (24%), Gaps = 33/222 (14%)
Query: 12 VIIPA-----RLN--SMRFPKKILADINGLPMILHTAIRARKANIGRVIVAV-------- 56
+ PA R + PK + I P+I + A +A + +
Sbjct: 5 CLFPAAGYGTRFLPITKTIPK-EMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLE 63
Query: 57 ---------------DDTKINEIVLQAGFESVMTHTSHQSGSDRIFEALNIIDSDKKSQI 101
+ + ++ E Q + A+ ++ ++
Sbjct: 64 DYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNEP 123
Query: 102 IVNMQADIPNIEPEILASVLLPLQNPIVDIGTLGTRIHGSTDPDDPNIVKIVVASPSENG 161
+ AD ++ +L + ++ + ++ E G
Sbjct: 124 FAVILAD--DLCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEWLEEG 181
Query: 162 CFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKRFTQLSPS 203
+ +G Y + + ++ P
Sbjct: 182 VYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPG 223
>2obe_A Hexon, PII; trimer, double-barrel subunit, viral jellyroll, base,
hypervariable tower, viral protein; 2.10A {Simian
adenovirus 25} PDB: 1p2z_A* 1p30_A 2bvi_F
Length = 932
Score = 27.0 bits (60), Expect = 4.3
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 147 PNIVKIVVASPSEN-GCFRALYFTRTKT 173
N + ++ PS N FR FTR KT
Sbjct: 638 ANATNVPISIPSRNWAAFRGWSFTRLKT 665
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport,
CF(0), stator, transport, acetylation, hydrogen ION
transport; 2.8A {Bos taurus} SCOP: f.53.1.1
Length = 160
Score = 27.0 bits (60), Expect = 4.5
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 195 KRFTQLSPSVLEQRESLEQLRALEARMRIDVK--IVQSNAMSVDTTNDLEKVRTLIPHDH 252
K+F L + E + Q+ A E + QS + +LEK+R +IP D
Sbjct: 71 KKFNALKVPIPEDKY-TAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEKMRNIIPFDQ 129
>1m1l_A Suppressor of fused; gene regulation, hedgehog signaling, signal
transduction, signaling protein; 2.65A {Homo sapiens}
SCOP: d.260.1.1
Length = 236
Score = 27.1 bits (60), Expect = 4.6
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 139 HGSTDPDDPNIVKIVVASPSENGCFRALYFTRTKTPHGTGPFYQHLGIYAYRREALKR 196
H D + I +++ + +TP G F Q +G+ + ++
Sbjct: 138 HSPLDNSESRIQHMLLTEDPQ--------MQPVQTPFGVVTFLQIVGVCTEELHSAQQ 187
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU
pyrophosphorylase, nucleotidyltransferase; HET: G1P;
2.65A {Sphingomonas elodea}
Length = 297
Score = 26.5 bits (57), Expect = 6.1
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 26 KILADINGLPMILHTAIRARKANIGRVIVAV 56
K + + P+I + A +A I ++I
Sbjct: 37 KEMLPVVDRPLIQYAVDEAVEAGIEQMIFVT 67
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase,
nucleotidyltransferase, metabolism; HET: GUD; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 323
Score = 26.6 bits (57), Expect = 6.5
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 12 VIIPA-----RLN--SMRFPKKILADINGLPMILHTAIRARKANIGRVIVAV 56
V++PA R + PK++L + P I A A + R+ +
Sbjct: 15 VVVPAAGLGTRFLPATKTVPKELL-PVVDTPGIELIAAEAAELGATRLAIIT 65
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF),
nucleus, coiled coil, structural genomics consortium,
SGC, structural protein; 2.40A {Homo sapiens}
Length = 95
Score = 26.3 bits (58), Expect = 8.6
Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 195 KRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTNDLEKVRTLIPHDHHK 254
R E R LE+++ LE + + + + ++ ++R +
Sbjct: 9 SRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKE--REMAEIRDQM--QQQL 64
Query: 255 GLYKKIFNDKI 265
Y+++ + K+
Sbjct: 65 NDYEQLLDVKL 75
>2h2m_A Protein MURR1, COMM domain-containing protein 1; all alpha-helical,
metal transport; NMR {Homo sapiens}
Length = 108
Score = 25.9 bits (57), Expect = 8.7
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 180 FYQHLGIYAYRREALKRFTQLSPSVLEQRESLEQLRALEARMRIDVKIVQSNAMSVDTTN 239
F+ + GI E L+ +QL P V E+ R A+MR +K + S M N
Sbjct: 24 FHGYPGI---TEELLR--SQLYPEV-----PPEEFRPFLAKMRGILKSIASADMDF---N 70
Query: 240 DLE 242
LE
Sbjct: 71 QLE 73
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.136 0.383
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,318,826
Number of extensions: 109808
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 55
Length of query: 268
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 177
Effective length of database: 3,487,026
Effective search space: 617203602
Effective search space used: 617203602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)