HHsearch alignment for GI: 254780766 and conserved domain: COG1195
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=610.08 Aligned_cols=361 Identities=32% Similarity=0.482 Sum_probs=325.6
Q ss_pred EEEEEEEEECCCCHHHEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEEEEEEECCCCC
Q ss_conf 18999999223254553673279879998689986444899999972886666787368874898320589888628532
Q gi|254780766|r 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEG 84 (375)
Q Consensus 5 M~i~~l~i~nFR~~~~~~i~f~~~~n~i~G~NG~GKT~iLEAI~~l~~gksfR~~~~~~li~~~~~~~~~~~~~~~~~~~ 84 (375)
T Consensus 1 M~l~~L~L~nFRNy~~~~l~~~p~~nvl~G~NgqGKTNlLEAI~~l~~grS~Rt~~~~~lir~~~~~~-~i~~~v~~~~~ 79 (363)
T COG1195 1 MYLLSLLLRNFRNYAELDLDLSPGVNVLVGENGQGKTNLLEAIYLLALGRSHRTSRDKELIRTGADEA-EISARVQRKGR 79 (363)
T ss_pred CCEEEEEHHHCCCCCCCEECCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCE-EEEEEEEECCC
T ss_conf 91036135331784120003699837998989886289999999971256765301457986188628-99999960551
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 00266753002466333211257743332101233345202100110012687234121010001358467788877776
Q gi|254780766|r 85 LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 (375)
Q Consensus 85 ~~~~~~~~~~~~~~~~k~~~~n~~~~~~~~~l~~~l~~v~~~p~~~~li~~~p~~RR~flD~~i~~~~~~y~~~l~~y~K 164 (375)
T Consensus 80 ~~~~~~~--~~~~-g~~~vring~~~~~~~el~g~l~~vlf~Pedl~Lv~G~P~~RRrFLD~~l~~~~p~y~~~~~~Y~k 156 (363)
T COG1195 80 EGTLGLQ--ISKK-GRRRVRINGTKARKLAELAGHLNVVLFTPEDLGLVKGSPSDRRRFLDWLLFQIEPVYLEALSNYEK 156 (363)
T ss_pred EEEEEEE--ECCC-CCEEEEECCCCCCCHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 2015787--5267-635898878224568988611756996546435005897888999988875269289999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 66667988630565432100245653279999999999999999999999985316430112201566676558967888
Q gi|254780766|r 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 (375)
Q Consensus 165 ~LkqRN~lLk~~~~d~~~l~~~~~qla~~~~~I~~~R~~~l~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (375)
T Consensus 157 ~lkqRN~~Lk~~~~d~~~L~~~d~qLa~~g~~i~~~R~~~l~~L~~~~~~~~~~~~~~~~~l~~~y~~~~~~--~~~~~~ 234 (363)
T COG1195 157 LLKQRNALLKQLQGDYAWLDVWDQQLAELGAEIAAARAEYLNALAPLAEKIHQLFLPELESLSIFYRGSVDV--TAWEIE 234 (363)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEECCCCC--CHHHHH
T ss_conf 999999998744677789999999999999999999999999999999999754086234342354033566--276778
Q ss_pred HHHHHHHHHCCCHHHCCEEECCCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 87654553111000000000257320011001245510233122058999999999999999998708997899801220
Q gi|254780766|r 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 (375)
Q Consensus 245 e~~~~~L~~~~~~d~~~~~t~~Gphr~d~~~~~~~~~~~~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s 324 (375)
T Consensus 235 ~~~~~~L~~~r~rD~~~G~Tl~GPHRdDl~~~~~~~~~-~~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~s 313 (363)
T COG1195 235 EDYLEALAKRRERDLARGYTLVGPHRDDLLFRLNGKPA-ADFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVAS 313 (363)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEEECCCCH-HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHH
T ss_conf 99999999877889976886758873104887778125-66558425899999999999999987428897898616567
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCHHHHH-HHHCCEEEEEECCCEEE
Q ss_conf 15989999999997417980999806967854-32126007997289689
Q gi|254780766|r 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQAL 373 (375)
Q Consensus 325 ~LD~~~~~~ll~~l~~~~~Qv~iTt~~~~~~~-~~~~~~~~~~i~~g~~~ 373 (375)
T Consensus 314 eLD~~Rr~~Ll~~-~~~~~Q~fvT~t~~~~~~~~~~~~~~~f~V~~g~i~ 362 (363)
T COG1195 314 ELDDGRRAALLDT-IELGVQVFVTTTDLEDIDDNLDENAQMFHVEDGKIT 362 (363)
T ss_pred HHCHHHHHHHHHH-CCCCCEEEEECCCHHHHHHHHHCCCEEEEEECCEEC
T ss_conf 5598999999743-445874999725777766652125407998411445