HHsearch alignment for GI: 254780766 and conserved domain: PRK00064
>PRK00064 recF recombination protein F; Reviewed.
Probab=100.00 E-value=0 Score=626.54 Aligned_cols=355 Identities=36% Similarity=0.548 Sum_probs=321.6
Q ss_pred EEEEEEEEECCCCHHHEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEEEEEEECCCCC
Q ss_conf 18999999223254553673279879998689986444899999972886666787368874898320589888628532
Q gi|254780766|r 5 IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEG 84 (375)
Q Consensus 5 M~i~~l~i~nFR~~~~~~i~f~~~~n~i~G~NG~GKT~iLEAI~~l~~gksfR~~~~~~li~~~~~~~~~~~~~~~~~~~ 84 (375)
T Consensus 1 M~i~~L~l~nFRn~~~~~l~~~~~~n~i~G~NGsGKTnlLEAI~~L~~grSfR~~~~~~li~~~~~~~-~v~a~~~~~~~ 79 (355)
T PRK00064 1 MYLTRLSLTDFRNYEELDLELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSHRTARDKELIRFGAEAA-VVHARVQKGGG 79 (355)
T ss_pred CEECEEEEECCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCE-EEEEEEEECCC
T ss_conf 97087887365598534783499808999999888899999999984898888898699972899878-99999983892
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 00266753002466333211257743332101233345202100110012687234121010001358467788877776
Q gi|254780766|r 85 LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164 (375)
Q Consensus 85 ~~~~~~~~~~~~~~~~k~~~~n~~~~~~~~~l~~~l~~v~~~p~~~~li~~~p~~RR~flD~~i~~~~~~y~~~l~~y~K 164 (375)
T Consensus 80 ~~~i~i~~~~--~-~~~~~~ing~~~~~~s~l~~~lp~v~~~P~~~~li~g~p~~RR~flD~~~~~~~~~y~~~l~~y~k 156 (355)
T PRK00064 80 ELPLGLEISR--K-GKRRVRINGEPQRKLSELAGLLNVVLFTPEDLRLVKGGPSERRRFLDRLLFQIEPVYASALSQYER 156 (355)
T ss_pred EEEEEEEECC--C-CCEEEEECCEECCCHHHHHHHCCEEEECCCHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 5899999836--9-965999999216478999722869998635576760797899999787655249189999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 66667988630565432100245653279999999999999999999999985316430112201566676558967888
Q gi|254780766|r 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244 (375)
Q Consensus 165 ~LkqRN~lLk~~~~d~~~l~~~~~qla~~~~~I~~~R~~~l~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (375)
T Consensus 157 ~LkqRN~lLK~~~~~~~~l~~w~~~la~~g~~I~~~R~~~~~~l~~~~~~~~~~l~~~~~~~~l~y~~~~~----~~~~~ 232 (355)
T PRK00064 157 ALKQRNALLKEQKADLAWLDVWDEQLAELGAAIAAARLEYLERLAPLAAKTHQEIFPEAELLSLSYQPGVD----LENIE 232 (355)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC----CHHHH
T ss_conf 99999999720578847899999999999999999999999999999999999857974445899827998----22589
Q ss_pred HHHHHHHHHCCCHHHCCEEECCCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
Q ss_conf 87654553111000000000257320011001245510233122058999999999999999998708997899801220
Q gi|254780766|r 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324 (375)
Q Consensus 245 e~~~~~L~~~~~~d~~~~~t~~Gphr~d~~~~~~~~~~~~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s 324 (375)
T Consensus 233 ~~l~~~L~~~~~~D~~~g~T~~GPHRdD~~~~~~~~~~-~~~~S~GQqK~~~lalkLAq~~~~~~~~~~~PIlLlDDv~s 311 (355)
T PRK00064 233 EDLLEALAKNRERDRARGRTLVGPHRDDLRVRINGKPA-ADFASTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVAS 311 (355)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 99999999867989982888889873438999898434-43146238999999999999999998549997899948300
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCEEEEEEC
Q ss_conf 15989999999997417980999806967854321260079972
Q gi|254780766|r 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368 (375)
Q Consensus 325 ~LD~~~~~~ll~~l~~~~~Qv~iTt~~~~~~~~~~~~~~~~~i~ 368 (375)
T Consensus 312 ELD~~r~~~ll~~l~~~~~QvfiT~td~~~~~~~~~~~~~FhVe 355 (355)
T PRK00064 312 ELDDGRRAALLETLIALGAQVFITATDLEGFDALWENAKIFHVE 355 (355)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCEEEEC
T ss_conf 16999999999998747986999757878876554348489969