HHsearch alignment for GI: 254780766 and conserved domain: PRK11629
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional.
Probab=98.58 E-value=6.1e-07 Score=64.51 Aligned_cols=78 Identities=17% Similarity=0.353 Sum_probs=64.0
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHC
Q ss_conf 312205899999999999999999870899789980122015989999999997417----9809998069678543212
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~----~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 144 ~~LSGGqkQRvaiAraL~---------~~P~illlDEPTs~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~a~~~-~ 213 (233)
T PRK11629 144 SELSGGERQRVAIARALV---------NNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-S 213 (233)
T ss_pred CEECHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHH-C
T ss_conf 663899999999999996---------599999992888879999999999999999997098999986899999960-9
Q ss_pred CEEEEEECCCEEEE
Q ss_conf 60079972896895
Q gi|254780766|r 361 TAKFMRISNHQALC 374 (375)
Q Consensus 361 ~~~~~~i~~g~~~~ 374 (375)
T Consensus 214 --r~i~m~dG~iv~ 225 (233)
T PRK11629 214 --RQLEMRDGRLTA 225 (233)
T ss_pred --CEEEEECCEEEE
T ss_conf --899997999999