HHsearch alignment for GI: 254780766 and conserved domain: TIGR00618
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=99.06 E-value=2.4e-10 Score=86.78 Aligned_cols=59 Identities=29% Similarity=0.456 Sum_probs=50.0
Q ss_pred EEEEEEEEECCCCHHH-EEEECCC------CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 1899999922325455-3673279------879998689986444899999972886666787368
Q gi|254780766|r 5 IKIKFLNISEFRNYAS-LRLVFDA------QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63 (375)
Q Consensus 5 M~i~~l~i~nFR~~~~-~~i~f~~------~~n~i~G~NG~GKT~iLEAI~~l~~gksfR~~~~~~ 63 (375)
T Consensus 1 m~pl~L~lkn~~~y~~~~~~dfT~~~fasl~~f~i~G~tGAGKtsLldAI~yALYGkP~~~~s~~~ 66 (1063)
T TIGR00618 1 MKPLKLELKNFTSYKGESVIDFTALGFASLKLFVICGKTGAGKTSLLDAITYALYGKPVPRESEVV 66 (1063)
T ss_pred CCCCEEEECCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 965347640635345761010278872125736777889983545999999987288877514678