HHsearch alignment for GI: 254780766 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.49 E-value=0.0039 Score=39.64 Aligned_cols=75 Identities=17% Similarity=0.323 Sum_probs=57.3
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHCCE
Q ss_conf 12205899999999999999999870899789980122015989999999997417---980999806967854321260
Q gi|254780766|r 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNETA 362 (375)
Q Consensus 286 ~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~~~~ 362 (375)
T Consensus 466 ~LSGGQRQRIaLA---------RAlyG~P~lvvLDEPNsNLD~~GE~AL~~Ai~~lK~rg~tvv~itHRp~lL~~vD-k- 534 (556)
T TIGR01842 466 TLSGGQRQRIALA---------RALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGLVD-K- 534 (556)
T ss_pred CCCCHHHHHHHHH---------HHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHH-H-
T ss_conf 7861468999999---------9871798378732889876617899999999999867972899841068999999-9-
Q ss_pred EEEEECCCEE
Q ss_conf 0799728968
Q gi|254780766|r 363 KFMRISNHQA 372 (375)
Q Consensus 363 ~~~~i~~g~~ 372 (375)
T Consensus 535 -Il~l~dG~~ 543 (556)
T TIGR01842 535 -ILVLQDGRL 543 (556)
T ss_pred -HHHHHCCHH
T ss_conf -999840716