HHsearch alignment for GI: 254780766 and conserved domain: TIGR03411
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.58 E-value=6.6e-07 Score=64.27 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=66.5
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCC
Q ss_conf 3312205899999999999999999870899789980122015989999999997417--98099980696785432126
Q gi|254780766|r 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNET 361 (375)
Q Consensus 284 ~~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~ 361 (375)
T Consensus 141 ~~~LSgGqkqrv~iA~aL~---------~~P~lllLDEPt~gLD~~~~~~i~~ll~~l~~~~tvi~isHdl~~~~~~~dr 211 (242)
T TIGR03411 141 AGLLSHGQKQWLEIGMLLM---------QDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADK 211 (242)
T ss_pred HHHCCHHHHHHHHHHHHHH---------HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCE
T ss_conf 3459978999999999997---------3899899918643699899999999999985799799997859999997999
Q ss_pred EEEEEECCCEEEE
Q ss_conf 0079972896895
Q gi|254780766|r 362 AKFMRISNHQALC 374 (375)
Q Consensus 362 ~~~~~i~~g~~~~ 374 (375)
T Consensus 212 --v~vl~~G~iv~ 222 (242)
T TIGR03411 212 --VTVLHQGSVLA 222 (242)
T ss_pred --EEEEECCEEEE
T ss_conf --99997999999