HHsearch alignment for GI: 254780766 and conserved domain: TIGR03415
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.31 E-value=6.6e-06 Score=57.75 Aligned_cols=79 Identities=22% Similarity=0.151 Sum_probs=61.5
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHH----CCCCEEEEECCHHHHHHHHC
Q ss_conf 31220589999999999999999987089978998012201598999999999741----79809998069678543212
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD----IGSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~----~~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 163 ~eLSGGqqQRVaIARALa---------~~P~iLLmDEPfsaLD~~~r~~l~~~l~~L~~~~~~TiifVTHD~~EA~~laD 233 (382)
T TIGR03415 163 GELSGGMQQRVGLARAFA---------MDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGN 233 (382)
T ss_pred HHCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCC
T ss_conf 557988999999999986---------38998997088765599999999999999999869989998799999998689
Q ss_pred CEEEEEECCCEEEE
Q ss_conf 60079972896895
Q gi|254780766|r 361 TAKFMRISNHQALC 374 (375)
Q Consensus 361 ~~~~~~i~~g~~~~ 374 (375)
T Consensus 234 R--IaVM~~G~IvQ 245 (382)
T TIGR03415 234 R--IAIMEGGRIIQ 245 (382)
T ss_pred E--EEEEECCEEEE
T ss_conf 8--99998998999