HHsearch alignment for GI: 254780766 and conserved domain: cd03215
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.57 E-value=2.7e-07 Score=66.80 Aligned_cols=76 Identities=18% Similarity=0.370 Sum_probs=62.9
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHCCE
Q ss_conf 12205899999999999999999870899789980122015989999999997417---980999806967854321260
Q gi|254780766|r 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNETA 362 (375)
Q Consensus 286 ~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~~~~ 362 (375)
T Consensus 104 ~LSGG~~Qrv~lAral~---------~~p~llllDEPT~gLD~~~~~~i~~~i~~l~~~g~tvi~isHdl~~~~~~~Dr- 173 (182)
T cd03215 104 LLSGGNQQKVVLARWLA---------RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDR- 173 (182)
T ss_pred CCCHHHHHHHHHHHHHH---------CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCE-
T ss_conf 79989999999999997---------19999998687545899999999999999997899999996879999997999-
Q ss_pred EEEEECCCEE
Q ss_conf 0799728968
Q gi|254780766|r 363 KFMRISNHQA 372 (375)
Q Consensus 363 ~~~~i~~g~~ 372 (375)
T Consensus 174 -v~vl~~G~i 182 (182)
T cd03215 174 -ILVMYEGRI 182 (182)
T ss_pred -EEEECCCCC
T ss_conf -999839999