HHsearch alignment for GI: 254780766 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.27 E-value=0.00044 Score=45.88 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=28.3
Q ss_pred ECCCCHHHEEEECCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf 2232545536732798-79998689986444899999
Q gi|254780766|r 13 SEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAIS 48 (375)
Q Consensus 13 ~nFR~~~~~~i~f~~~-~n~i~G~NG~GKT~iLEAI~ 48 (375)
T Consensus 11 g~~~aL~~vsl~i~~Gei~gliG~nGaGKSTL~~~i~ 47 (236)
T cd03219 11 GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 9999872338998899899999899973999999996