HHsearch alignment for GI: 254780766 and conserved domain: cd03232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=3.4e-06 Score=59.61 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCH-HHHHHHHCCE
Q ss_conf 2205899999999999999999870899789980122015989999999997417---98099980696-7854321260
Q gi|254780766|r 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDK-SVFDSLNETA 362 (375)
Q Consensus 287 ~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~-~~~~~~~~~~ 362 (375)
T Consensus 109 LS~gqrqrv~iA~aL~---------~~P~lllLDEPt~gLD~~~~~~i~~~l~~l~~~g~tiii~th~~~~~i~~~~Dr- 178 (192)
T cd03232 109 LSVEQRKRLTIGVELA---------AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDR- 178 (192)
T ss_pred CCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCE-
T ss_conf 7976765899999984---------499889984887688989999999999999969999999983637999987999-
Q ss_pred EEEEECC-CEEEE
Q ss_conf 0799728-96895
Q gi|254780766|r 363 KFMRISN-HQALC 374 (375)
Q Consensus 363 ~~~~i~~-g~~~~ 374 (375)
T Consensus 179 -iivl~~GG~ivy 190 (192)
T cd03232 179 -LLLLKRGGKTVY 190 (192)
T ss_pred -EEEECCCCEEEE
T ss_conf -999979999998