HHsearch alignment for GI: 254780766 and conserved domain: cd03237
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.61 E-value=3.3e-07 Score=66.26 Aligned_cols=79 Identities=25% Similarity=0.286 Sum_probs=64.5
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHC
Q ss_conf 312205899999999999999999870899789980122015989999999997417----9809998069678543212
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~----~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 114 ~~LSGGqkQRv~iA~aL~~---------~p~ilLLDEPts~LD~~~~~~i~~~i~~l~~~~~~Tvi~VtHDl~~a~~~aD 184 (246)
T cd03237 114 PELSGGELQRVAIAACLSK---------DADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLAD 184 (246)
T ss_pred HHCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf 0289859999999999841---------9999998489876899999999999999998679899998378999998699
Q ss_pred CEEEEEEC-CCEEEE
Q ss_conf 60079972-896895
Q gi|254780766|r 361 TAKFMRIS-NHQALC 374 (375)
Q Consensus 361 ~~~~~~i~-~g~~~~ 374 (375)
T Consensus 185 r--Iivl~G~g~i~~ 197 (246)
T cd03237 185 R--LIVFEGEPSVNG 197 (246)
T ss_pred E--EEEECCCCEEEE
T ss_conf 9--999818864999