HHsearch alignment for GI: 254780766 and conserved domain: cd03237

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.61  E-value=3.3e-07  Score=66.26  Aligned_cols=79  Identities=25%  Similarity=0.286  Sum_probs=64.5

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHC
Q ss_conf             312205899999999999999999870899789980122015989999999997417----9809998069678543212
Q gi|254780766|r  285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLNE  360 (375)
Q Consensus       285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~----~~Qv~iTt~~~~~~~~~~~  360 (375)
T Consensus       114 ~~LSGGqkQRv~iA~aL~~---------~p~ilLLDEPts~LD~~~~~~i~~~i~~l~~~~~~Tvi~VtHDl~~a~~~aD  184 (246)
T cd03237         114 PELSGGELQRVAIAACLSK---------DADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLAD  184 (246)
T ss_pred             HHCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
T ss_conf             0289859999999999841---------9999998489876899999999999999998679899998378999998699


Q ss_pred             CEEEEEEC-CCEEEE
Q ss_conf             60079972-896895
Q gi|254780766|r  361 TAKFMRIS-NHQALC  374 (375)
Q Consensus       361 ~~~~~~i~-~g~~~~  374 (375)
T Consensus       185 r--Iivl~G~g~i~~  197 (246)
T cd03237         185 R--LIVFEGEPSVNG  197 (246)
T ss_pred             E--EEEECCCCEEEE
T ss_conf             9--999818864999