HHsearch alignment for GI: 254780766 and conserved domain: cd03238

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.48  E-value=9e-07  Score=63.41  Aligned_cols=77  Identities=21%  Similarity=0.318  Sum_probs=59.4

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC--EEEEECCHHCCCHHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHH
Q ss_conf             3122058999999999999999998708997--89980122015989999999997417---980999806967854321
Q gi|254780766|r  285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAP--ILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLN  359 (375)
Q Consensus       285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~p--ilLiDdi~s~LD~~~~~~ll~~l~~~---~~Qv~iTt~~~~~~~~~~  359 (375)
T Consensus        86 ~~LSGGqkQRvaiAraL~~---------~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd~~~~~~-a  155 (176)
T cd03238          86 STLSGGELQRVKLASELFS---------EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS-A  155 (176)
T ss_pred             CCCCHHHHHHHHHHHHHHH---------CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH-C
T ss_conf             8689999999999999986---------89986899717744589879999999999999879989999478799983-9


Q ss_pred             CCEEEEEECCCEEE
Q ss_conf             26007997289689
Q gi|254780766|r  360 ETAKFMRISNHQAL  373 (375)
Q Consensus       360 ~~~~~~~i~~g~~~  373 (375)
T Consensus       156 Dr--ii~l~~G~i~  167 (176)
T cd03238         156 DW--IIDFGPGSGK  167 (176)
T ss_pred             CE--EEEECCCCCC
T ss_conf             99--9994599766