HHsearch alignment for GI: 254780766 and conserved domain: cd03241

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79  E-value=1.3e-17  Score=134.07  Aligned_cols=228  Identities=20%  Similarity=0.227  Sum_probs=153.1

Q ss_pred             EEEEEEECCCCHHHEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEEEEEEECCC----
Q ss_conf             9999992232545536732798799986899864448999999728866667873688748983205898886285----
Q gi|254780766|r    7 IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM----   82 (375)
Q Consensus         7 i~~l~i~nFR~~~~~~i~f~~~~n~i~G~NG~GKT~iLEAI~~l~~gksfR~~~~~~li~~~~~~~~~~~~~~~~~----   82 (375)
T Consensus         1 L~~L~IkNfalId~l~l~F~~GlnVlTGETGAGKSIlidAL~lllG~R-----a~~~~IR~g~~~a~v-ea~F~i~~~~~   74 (276)
T cd03241           1 LLELSIKNFALIEELELDFEEGLTVLTGETGAGKSILLDALSLLLGGR-----ASADLIRSGAEKAVV-EGVFDISDEEE   74 (276)
T ss_pred             CCEEEEEEEEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCC-----CCCCCCCCCCCEEEE-EEEEECCCCHH
T ss_conf             968999608989887982599975887899888999999999962899-----884533588850899-99997599668


Q ss_pred             ----------CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEECCHHHCCCCCCHHHHHHCCCCCCCC
Q ss_conf             ----------32002667530024663332112577433321012333-4520210011001268723412101000135
Q gi|254780766|r   83 ----------EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL-RISWLVPSMDRIFSGLSMERRRFLDRMVFAI  151 (375)
Q Consensus        83 ----------~~~~~~~~~~~~~~~~~~k~~~~n~~~~~~~~~l~~~l-~~v~~~p~~~~li~~~p~~RR~flD~~i~~~  151 (375)
T Consensus        75 ~~~~l~~~~~~~d~~liirR~i~~~GrS-r~~INg~~vt~-~~L~~l~~~LidIHgQhe~q~Ll~~~~h~~lLD~~~---  149 (276)
T cd03241          75 AKALLLELGIEDDDDLIIRREISRKGRS-RYFINGQSVTL-KLLRELGSLLVDIHGQHDHQNLLNPERQLDLLDGGL---  149 (276)
T ss_pred             HHHHHHHCCCCCCCCEEEEEEECCCCCC-EEEECCEECCH-HHHHHHHHHEEEECCCCCCHHHCCHHHHHHHHCCCC---
T ss_conf             8999973799778844999998689970-69999998379-999999740089907961055549867999876986---


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             84677888777766666798863056543210024565327999999999999999999999998531643011220156
Q gi|254780766|r  152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF  231 (375)
Q Consensus       152 ~~~y~~~l~~y~K~LkqRN~lLk~~~~d~~~l~~~~~qla~~~~~I~~~R~~~l~~l~~~l~~~~~~~~~~~~~~~l~~~  231 (375)
T Consensus       150 --------------------------------d~ie----------------f~--------------------~~--~~  159 (276)
T cd03241         150 --------------------------------DDVE----------------FL--------------------FS--TN  159 (276)
T ss_pred             --------------------------------CCHH----------------HH--------------------CC--CC
T ss_conf             --------------------------------1002----------------12--------------------15--99


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCHHHCCEEECCCCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             66765589678888765455311100000000025732001100124551023312205899999999999999999870
Q gi|254780766|r  232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT  311 (375)
Q Consensus       232 ~~~~~~~~~~~~~e~~~~~L~~~~~~d~~~~~t~~Gphr~d~~~~~~~~~~~~~~~S~Gqqk~~~l~l~La~~~~~~~~~  311 (375)
T Consensus       160 ~g~----~~--------~------------------~--------------l~~~aSgGElSRi~LAlk~~-----~~~~  190 (276)
T cd03241         160 PGE----PL--------K------------------P--------------LAKIASGGELSRLMLALKAI-----LARK  190 (276)
T ss_pred             CCC----CC--------C------------------H--------------HHHHHCHHHHHHHHHHHHHH-----HCCC
T ss_conf             899----75--------2------------------4--------------67662764899999999999-----6278


Q ss_pred             CCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCEEE
Q ss_conf             899789980122015989999999997417--98099980696785432126007
Q gi|254780766|r  312 GFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKF  364 (375)
Q Consensus       312 ~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~~~  364 (375)
T Consensus       191 ~~~~tliFDEID~GigG~~A~~vg~~l~~ls~~~QVi~ITHlpQvAa~ad~H~~V  245 (276)
T cd03241         191 DAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLV  245 (276)
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCCCEEEE
T ss_conf             8998579844578989899999999999984798799981779988413767999