HHsearch alignment for GI: 254780766 and conserved domain: cd03247
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.32 E-value=4.5e-11 Score=91.45 Aligned_cols=76 Identities=21% Similarity=0.314 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCEEE
Q ss_conf 2205899999999999999999870899789980122015989999999997417--98099980696785432126007
Q gi|254780766|r 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKF 364 (375)
Q Consensus 287 ~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~~~ 364 (375)
T Consensus 99 LSgGqkqRv~iAral~---------~~p~ililDEpts~LD~~t~~~i~~~l~~~~~~~Tvi~itH~~~~l~~~---D~I 166 (178)
T cd03247 99 FSGGERQRLALARILL---------QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHM---DKI 166 (178)
T ss_pred CCHHHHHHHHHHHHHH---------HCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHC---CEE
T ss_conf 8999999999999996---------4979767228655699899999999999983999999980589899869---999
Q ss_pred EEECCCEEEE
Q ss_conf 9972896895
Q gi|254780766|r 365 MRISNHQALC 374 (375)
Q Consensus 365 ~~i~~g~~~~ 374 (375)
T Consensus 167 ivl~~G~Iv~ 176 (178)
T cd03247 167 LFLENGKIIM 176 (178)
T ss_pred EEEECCEEEE
T ss_conf 9998999998