HHsearch alignment for GI: 254780766 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.33 E-value=4.1e-06 Score=59.10 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=59.5
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCE
Q ss_conf 312205899999999999999999870899789980122015989999999997417--980999806967854321260
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETA 362 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~ 362 (375)
T Consensus 149 ~~LSgGqkQRialARal~---------~~p~ililDEptSaLD~~te~~i~~~l~~~~~~~Tvi~ItH~l~~~~~-~D-- 216 (226)
T cd03248 149 SQLSGGQKQRVAIARALI---------RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-AD-- 216 (226)
T ss_pred CCCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-CC--
T ss_conf 876999999999999997---------599999997976688999999999999986699999999379999984-99--
Q ss_pred EEEEECCCEE
Q ss_conf 0799728968
Q gi|254780766|r 363 KFMRISNHQA 372 (375)
Q Consensus 363 ~~~~i~~g~~ 372 (375)
T Consensus 217 rIivme~G~I 226 (226)
T cd03248 217 QILVLDGGRI 226 (226)
T ss_pred EEEEEECCCC
T ss_conf 9999939999