HHsearch alignment for GI: 254780766 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.05 E-value=0.00055 Score=45.22 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=26.3
Q ss_pred HHHEEEECCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf 45536732798-79998689986444899999
Q gi|254780766|r 18 YASLRLVFDAQ-HTIFVGDNGVGKTNILEAIS 48 (375)
Q Consensus 18 ~~~~~i~f~~~-~n~i~G~NG~GKT~iLEAI~ 48 (375)
T Consensus 30 L~~is~~i~~Ge~vaIvG~sGsGKSTL~~ll~ 61 (226)
T cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLE 61 (226)
T ss_pred EECEEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 74538998299999999999984999999996