HHsearch alignment for GI: 254780766 and conserved domain: cd03249
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.27 E-value=2.2e-05 Score=54.35 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=59.3
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCEE
Q ss_conf 12205899999999999999999870899789980122015989999999997417--9809998069678543212600
Q gi|254780766|r 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAK 363 (375)
Q Consensus 286 ~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~~ 363 (375)
T Consensus 139 ~LSgGQ~QRialARAl~---------~~~~ililDE~tsaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~---~D~ 206 (238)
T cd03249 139 QLSGGQKQRIAIARALL---------RNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRN---ADL 206 (238)
T ss_pred CCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH---CCE
T ss_conf 58999999999999996---------599999997876678999999999999998099989998488889985---999
Q ss_pred EEEECCCEEEE
Q ss_conf 79972896895
Q gi|254780766|r 364 FMRISNHQALC 374 (375)
Q Consensus 364 ~~~i~~g~~~~ 374 (375)
T Consensus 207 Iivl~~G~Ive 217 (238)
T cd03249 207 IAVLQNGQVVE 217 (238)
T ss_pred EEEEECCEEEE
T ss_conf 99998999999