HHsearch alignment for GI: 254780766 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=2.6e-06 Score=60.42 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=60.7
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCEE
Q ss_conf 12205899999999999999999870899789980122015989999999997417--9809998069678543212600
Q gi|254780766|r 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAK 363 (375)
Q Consensus 286 ~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~~ 363 (375)
T Consensus 138 ~LSgGQ~QRi~lARal~---------~~~~iliLDEpts~LD~~~e~~i~~~l~~~~~~~TvI~itH~l~~l~~---~D~ 205 (234)
T cd03251 138 KLSGGQRQRIAIARALL---------KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN---ADR 205 (234)
T ss_pred CCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH---CCE
T ss_conf 58999999999999996---------499989996876689989999999999998199989999278889985---999
Q ss_pred EEEECCCEEEE
Q ss_conf 79972896895
Q gi|254780766|r 364 FMRISNHQALC 374 (375)
Q Consensus 364 ~~~i~~g~~~~ 374 (375)
T Consensus 206 Iivl~~G~ive 216 (234)
T cd03251 206 IVVLEDGKIVE 216 (234)
T ss_pred EEEEECCEEEE
T ss_conf 99998999999