HHsearch alignment for GI: 254780766 and conserved domain: cd03251

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49  E-value=2.6e-06  Score=60.42  Aligned_cols=77  Identities=17%  Similarity=0.298  Sum_probs=60.7

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCEE
Q ss_conf             12205899999999999999999870899789980122015989999999997417--9809998069678543212600
Q gi|254780766|r  286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAK  363 (375)
Q Consensus       286 ~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~~  363 (375)
T Consensus       138 ~LSgGQ~QRi~lARal~---------~~~~iliLDEpts~LD~~~e~~i~~~l~~~~~~~TvI~itH~l~~l~~---~D~  205 (234)
T cd03251         138 KLSGGQRQRIAIARALL---------KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN---ADR  205 (234)
T ss_pred             CCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH---CCE
T ss_conf             58999999999999996---------499989996876689989999999999998199989999278889985---999


Q ss_pred             EEEECCCEEEE
Q ss_conf             79972896895
Q gi|254780766|r  364 FMRISNHQALC  374 (375)
Q Consensus       364 ~~~i~~g~~~~  374 (375)
T Consensus       206 Iivl~~G~ive  216 (234)
T cd03251         206 IVVLEDGKIVE  216 (234)
T ss_pred             EEEEECCEEEE
T ss_conf             99998999999