HHsearch alignment for GI: 254780766 and conserved domain: cd03253

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.32  E-value=6e-06  Score=58.03  Aligned_cols=77  Identities=22%  Similarity=0.327  Sum_probs=59.6

Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHCCEE
Q ss_conf             12205899999999999999999870899789980122015989999999997417--9809998069678543212600
Q gi|254780766|r  286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAK  363 (375)
Q Consensus       286 ~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~--~~Qv~iTt~~~~~~~~~~~~~~  363 (375)
T Consensus       137 ~LSgGQ~QrialARal~---------~~~~ililDEpts~LD~~te~~i~~~l~~~~~~~Tvi~itHr~~~~~~-~D--~  204 (236)
T cd03253         137 KLSGGEKQRVAIARAIL---------KNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-AD--K  204 (236)
T ss_pred             CCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH-CC--E
T ss_conf             26999999999999996---------499999996875679989999999999998099989998268788985-99--9


Q ss_pred             EEEECCCEEEE
Q ss_conf             79972896895
Q gi|254780766|r  364 FMRISNHQALC  374 (375)
Q Consensus       364 ~~~i~~g~~~~  374 (375)
T Consensus       205 Iivl~~G~iv~  215 (236)
T cd03253         205 IIVLKDGRIVE  215 (236)
T ss_pred             EEEEECCEEEE
T ss_conf             99998999999