HHsearch alignment for GI: 254780766 and conserved domain: cd03255
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.52 E-value=6e-07 Score=64.57 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=62.2
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCCHHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHC
Q ss_conf 312205899999999999999999870899789980122015989999999997417----9809998069678543212
Q gi|254780766|r 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLNE 360 (375)
Q Consensus 285 ~~~S~Gqqk~~~l~l~La~~~~~~~~~~~~pilLiDdi~s~LD~~~~~~ll~~l~~~----~~Qv~iTt~~~~~~~~~~~ 360 (375)
T Consensus 139 ~~LSGG~kQRv~iAraL~---------~~P~llllDEPTs~LD~~~~~~i~~~l~~l~~~~~~tii~itHd~~~~-~~aD 208 (218)
T cd03255 139 SELSGGQQQRVAIARALA---------NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYAD 208 (218)
T ss_pred CCCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHCC
T ss_conf 638999999999999985---------599999981888768999999999999999996298999989688999-8699
Q ss_pred CEEEEEECCCEE
Q ss_conf 600799728968
Q gi|254780766|r 361 TAKFMRISNHQA 372 (375)
Q Consensus 361 ~~~~~~i~~g~~ 372 (375)
T Consensus 209 r--v~~m~~G~I 218 (218)
T cd03255 209 R--IIELRDGKI 218 (218)
T ss_pred E--EEEEECCCC
T ss_conf 8--999989999